miRNA display CGI


Results 1 - 20 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5994 5' -56.8 NC_001806.1 + 41163 0.66 0.884431
Target:  5'- --aUGCgucgGGGUCCAcGcGGGC--CGCGGg -3'
miRNA:   3'- aaaACG----CCCAGGU-CuCCCGuuGCGCC- -5'
5994 5' -56.8 NC_001806.1 + 131026 0.66 0.884431
Target:  5'- ---cGCGGGUCCGuuagcGAGacGGaCcACGCGGu -3'
miRNA:   3'- aaaaCGCCCAGGU-----CUC--CC-GuUGCGCC- -5'
5994 5' -56.8 NC_001806.1 + 119593 0.66 0.884431
Target:  5'- ---gGCGGGUCUGGAGcccccCGGCGgGGg -3'
miRNA:   3'- aaaaCGCCCAGGUCUCcc---GUUGCgCC- -5'
5994 5' -56.8 NC_001806.1 + 148532 0.66 0.884431
Target:  5'- --aUGCGGGUCUGGGGGuCGuucACGauCGGg -3'
miRNA:   3'- aaaACGCCCAGGUCUCCcGU---UGC--GCC- -5'
5994 5' -56.8 NC_001806.1 + 101813 0.66 0.882339
Target:  5'- --gUGCGGGugcgguugaugaguUCCAGGGcGGUGAgGCGc -3'
miRNA:   3'- aaaACGCCC--------------AGGUCUC-CCGUUgCGCc -5'
5994 5' -56.8 NC_001806.1 + 100180 0.66 0.880227
Target:  5'- ---gGCuGGGUCCcgagaacagcaccccGGGauacugauGGGCGACGUGGg -3'
miRNA:   3'- aaaaCG-CCCAGG---------------UCU--------CCCGUUGCGCC- -5'
5994 5' -56.8 NC_001806.1 + 74715 0.66 0.878095
Target:  5'- gUUUGCGGGagcgcgcgcgcUCCcuggaggcaaugcucGAGGG-AGCGCGGg -3'
miRNA:   3'- aAAACGCCC-----------AGGu--------------CUCCCgUUGCGCC- -5'
5994 5' -56.8 NC_001806.1 + 150331 0.66 0.87738
Target:  5'- --aUGCGGGUUCAuuGaGCGAccCGCGGg -3'
miRNA:   3'- aaaACGCCCAGGUcuCcCGUU--GCGCC- -5'
5994 5' -56.8 NC_001806.1 + 44937 0.66 0.87738
Target:  5'- ---cGUGGuGcCCGGGGcuGGCuAGCGCGGg -3'
miRNA:   3'- aaaaCGCC-CaGGUCUC--CCG-UUGCGCC- -5'
5994 5' -56.8 NC_001806.1 + 30594 0.66 0.87738
Target:  5'- ---gGCaGGGgCCaAGAGGGCGGCGaCGc -3'
miRNA:   3'- aaaaCG-CCCaGG-UCUCCCGUUGC-GCc -5'
5994 5' -56.8 NC_001806.1 + 59058 0.66 0.875944
Target:  5'- ---gGCGGGggccacaccgCCAGGGGaauccgucauccCAACGCGGg -3'
miRNA:   3'- aaaaCGCCCa---------GGUCUCCc-----------GUUGCGCC- -5'
5994 5' -56.8 NC_001806.1 + 9199 0.66 0.870112
Target:  5'- ---cGCGGGUgUggcGAGGGCGcggucgACGUGGc -3'
miRNA:   3'- aaaaCGCCCAgGu--CUCCCGU------UGCGCC- -5'
5994 5' -56.8 NC_001806.1 + 150476 0.66 0.870112
Target:  5'- ---cGCGGGaauugCCGGAagcgggaaGGGCGGC-CGGg -3'
miRNA:   3'- aaaaCGCCCa----GGUCU--------CCCGUUGcGCC- -5'
5994 5' -56.8 NC_001806.1 + 147107 0.66 0.870112
Target:  5'- ---cGCGGc-CCAGAa-GCAGCGCGGg -3'
miRNA:   3'- aaaaCGCCcaGGUCUccCGUUGCGCC- -5'
5994 5' -56.8 NC_001806.1 + 142170 0.66 0.869373
Target:  5'- --gUG-GGGUCCGacguggcgaugauGGGcGGCGGCGUGGu -3'
miRNA:   3'- aaaACgCCCAGGU-------------CUC-CCGUUGCGCC- -5'
5994 5' -56.8 NC_001806.1 + 133140 0.66 0.862629
Target:  5'- ---cGC-GGUCUGcGGGGGCGAUGgGGg -3'
miRNA:   3'- aaaaCGcCCAGGU-CUCCCGUUGCgCC- -5'
5994 5' -56.8 NC_001806.1 + 9765 0.66 0.862629
Target:  5'- ---cGUGGGUU--GGGGGCG-CGUGGg -3'
miRNA:   3'- aaaaCGCCCAGguCUCCCGUuGCGCC- -5'
5994 5' -56.8 NC_001806.1 + 24877 0.66 0.862629
Target:  5'- ---gGCGGGggCCGuggaggugcuGGGGGCGGagGCGGg -3'
miRNA:   3'- aaaaCGCCCa-GGU----------CUCCCGUUg-CGCC- -5'
5994 5' -56.8 NC_001806.1 + 103918 0.66 0.854938
Target:  5'- --cUGCGGGacgagCCGGGucacGcGGCuGACGCGGa -3'
miRNA:   3'- aaaACGCCCa----GGUCU----C-CCG-UUGCGCC- -5'
5994 5' -56.8 NC_001806.1 + 49582 0.66 0.854938
Target:  5'- ---cGuCGGG-CCGGAGGaCGGCgGCGGg -3'
miRNA:   3'- aaaaC-GCCCaGGUCUCCcGUUG-CGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.