miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5995 3' -53.6 NC_001806.1 + 43777 0.66 0.975862
Target:  5'- gCCGccCCCGGAggUUACgcUGGcGCCu -3'
miRNA:   3'- gGGCu-GGGUCUuuGAUGauACC-CGGc -5'
5995 3' -53.6 NC_001806.1 + 82216 0.66 0.975862
Target:  5'- aUCGcgccCCCGGggGCgUugUGUGGGCg- -3'
miRNA:   3'- gGGCu---GGGUCuuUG-AugAUACCCGgc -5'
5995 3' -53.6 NC_001806.1 + 28130 0.66 0.970434
Target:  5'- cCCCGcCCCGGAGcgaguacccGCcggcCUGaGGGCCGc -3'
miRNA:   3'- -GGGCuGGGUCUU---------UGau--GAUaCCCGGC- -5'
5995 3' -53.6 NC_001806.1 + 24863 0.66 0.970434
Target:  5'- aCCGugCUGGcgGCgGCgg-GGGCCGu -3'
miRNA:   3'- gGGCugGGUCuuUGaUGauaCCCGGC- -5'
5995 3' -53.6 NC_001806.1 + 21513 0.66 0.970434
Target:  5'- cCCCGGCCCGGGGccGCgaACgg-GaGGCCc -3'
miRNA:   3'- -GGGCUGGGUCUU--UGa-UGauaC-CCGGc -5'
5995 3' -53.6 NC_001806.1 + 126878 0.66 0.970434
Target:  5'- -aCGGCgCC-GggGCU-CUcgGGGCCGc -3'
miRNA:   3'- ggGCUG-GGuCuuUGAuGAuaCCCGGC- -5'
5995 3' -53.6 NC_001806.1 + 15846 0.66 0.970434
Target:  5'- aCgGGCCCcuuuuGggGCcGCgggGGGCCGa -3'
miRNA:   3'- gGgCUGGGu----CuuUGaUGauaCCCGGC- -5'
5995 3' -53.6 NC_001806.1 + 12060 0.66 0.970434
Target:  5'- uCUgGACCCGcaaAAGCgGCUGUuGGGCCa -3'
miRNA:   3'- -GGgCUGGGUc--UUUGaUGAUA-CCCGGc -5'
5995 3' -53.6 NC_001806.1 + 138972 0.66 0.967415
Target:  5'- gCCGuucacACCCAGuuugcGCUGCUGaagcGGGCCu -3'
miRNA:   3'- gGGC-----UGGGUCuu---UGAUGAUa---CCCGGc -5'
5995 3' -53.6 NC_001806.1 + 66825 0.66 0.966148
Target:  5'- gCCGGCCCGGGuggccgGugUGCgccgccuccugGGGCCc -3'
miRNA:   3'- gGGCUGGGUCU------UugAUGaua--------CCCGGc -5'
5995 3' -53.6 NC_001806.1 + 113748 0.66 0.964184
Target:  5'- aCCGGCCCGGA----GCUGggcGGGCa- -3'
miRNA:   3'- gGGCUGGGUCUuugaUGAUa--CCCGgc -5'
5995 3' -53.6 NC_001806.1 + 60828 0.66 0.964184
Target:  5'- aUCGGCCCcaAGGAGCgg----GGGCCGu -3'
miRNA:   3'- gGGCUGGG--UCUUUGaugauaCCCGGC- -5'
5995 3' -53.6 NC_001806.1 + 107462 0.66 0.964184
Target:  5'- gCCGACCUccGGACcgcGCUGgcccGGGCCGa -3'
miRNA:   3'- gGGCUGGGucUUUGa--UGAUa---CCCGGC- -5'
5995 3' -53.6 NC_001806.1 + 78236 0.66 0.963849
Target:  5'- cUCCGACCCGGGGccucauguucggcACgcgGCUGgcagacUGGcGCCGc -3'
miRNA:   3'- -GGGCUGGGUCUU-------------UGa--UGAU------ACC-CGGC- -5'
5995 3' -53.6 NC_001806.1 + 46311 0.66 0.960735
Target:  5'- aCCCGAUCCaAGAcACccGCgcagGGGCUGg -3'
miRNA:   3'- -GGGCUGGG-UCUuUGa-UGaua-CCCGGC- -5'
5995 3' -53.6 NC_001806.1 + 147676 0.66 0.960735
Target:  5'- cUCCGcCCCGGggGCcgggGCgcggGGGCgGg -3'
miRNA:   3'- -GGGCuGGGUCuuUGa---UGaua-CCCGgC- -5'
5995 3' -53.6 NC_001806.1 + 131972 0.66 0.960735
Target:  5'- -gCGGCCCuGGAGCgccagACc--GGGCCGg -3'
miRNA:   3'- ggGCUGGGuCUUUGa----UGauaCCCGGC- -5'
5995 3' -53.6 NC_001806.1 + 72319 0.66 0.960735
Target:  5'- aCCCGcgaucGCCCGGAcg-UACgGUGGGCgGg -3'
miRNA:   3'- -GGGC-----UGGGUCUuugAUGaUACCCGgC- -5'
5995 3' -53.6 NC_001806.1 + 37608 0.67 0.957062
Target:  5'- aCCGggGCCCAGggGCUAUUcgcGGCgGg -3'
miRNA:   3'- gGGC--UGGGUCuuUGAUGAuacCCGgC- -5'
5995 3' -53.6 NC_001806.1 + 25586 0.67 0.957062
Target:  5'- gCUgGGgCCGGGGAggGCUG-GGGCCGg -3'
miRNA:   3'- -GGgCUgGGUCUUUgaUGAUaCCCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.