miRNA display CGI


Results 1 - 20 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5996 5' -60.1 NC_001806.1 + 136370 0.66 0.804183
Target:  5'- gCCGGCGCGCUccGCGgccuCCGCGAccGUGg- -3'
miRNA:   3'- -GGCUGCGCGGcaCGC----GGCGCU--CAUgc -5'
5996 5' -60.1 NC_001806.1 + 122516 0.66 0.804183
Target:  5'- uCCaGCGUGCCGUacGUccgGCCGUGGGUGg- -3'
miRNA:   3'- -GGcUGCGCGGCA--CG---CGGCGCUCAUgc -5'
5996 5' -60.1 NC_001806.1 + 23712 0.66 0.804183
Target:  5'- aUCGcCGCGCgGUGCGCCGgGcccGCc -3'
miRNA:   3'- -GGCuGCGCGgCACGCGGCgCucaUGc -5'
5996 5' -60.1 NC_001806.1 + 152066 0.66 0.795638
Target:  5'- cCCGccuuuuuuGCGCGCgCGcGCGCCcGCGGGggGCc -3'
miRNA:   3'- -GGC--------UGCGCG-GCaCGCGG-CGCUCa-UGc -5'
5996 5' -60.1 NC_001806.1 + 4491 0.66 0.795638
Target:  5'- cCCGACG-GCCc-GCGCCuCGcGUGCGu -3'
miRNA:   3'- -GGCUGCgCGGcaCGCGGcGCuCAUGC- -5'
5996 5' -60.1 NC_001806.1 + 356 0.66 0.795638
Target:  5'- cCCGccuuuuuuGCGCGCgCGcGCGCCcGCGGGggGCc -3'
miRNA:   3'- -GGC--------UGCGCG-GCaCGCGG-CGCUCa-UGc -5'
5996 5' -60.1 NC_001806.1 + 151440 0.66 0.795638
Target:  5'- aCCGGCgggggGCGgCGgcgggGCgGCCGCGGGcGCGc -3'
miRNA:   3'- -GGCUG-----CGCgGCa----CG-CGGCGCUCaUGC- -5'
5996 5' -60.1 NC_001806.1 + 54928 0.66 0.795638
Target:  5'- gUCGGgGUGCuCGUGCGuCUGCGuGU-CGa -3'
miRNA:   3'- -GGCUgCGCG-GCACGC-GGCGCuCAuGC- -5'
5996 5' -60.1 NC_001806.1 + 3604 0.66 0.795638
Target:  5'- cCCGGCGgGCacCGcGCGCuCGCccGGUGCGg -3'
miRNA:   3'- -GGCUGCgCG--GCaCGCG-GCGc-UCAUGC- -5'
5996 5' -60.1 NC_001806.1 + 21994 0.66 0.794776
Target:  5'- gCCGACGCGaccuCCG-GCGCCuucuacGCGcgcuaucgcgacgGGUACGu -3'
miRNA:   3'- -GGCUGCGC----GGCaCGCGG------CGC-------------UCAUGC- -5'
5996 5' -60.1 NC_001806.1 + 148083 0.66 0.786958
Target:  5'- cCCGAUggGCGCCGagggggGCGCUGUccGAGccGCGg -3'
miRNA:   3'- -GGCUG--CGCGGCa-----CGCGGCG--CUCa-UGC- -5'
5996 5' -60.1 NC_001806.1 + 2504 0.66 0.786958
Target:  5'- gCCGcACGCgGCC-UGgGCgGCGGGgGCGg -3'
miRNA:   3'- -GGC-UGCG-CGGcACgCGgCGCUCaUGC- -5'
5996 5' -60.1 NC_001806.1 + 77660 0.66 0.786958
Target:  5'- cUCGGCGCGCUGcugaUGUGUCcCGAG-GCGg -3'
miRNA:   3'- -GGCUGCGCGGC----ACGCGGcGCUCaUGC- -5'
5996 5' -60.1 NC_001806.1 + 27278 0.66 0.786958
Target:  5'- aUCGGCG-GCCGccaGCGCgGCGGGgccCGg -3'
miRNA:   3'- -GGCUGCgCGGCa--CGCGgCGCUCau-GC- -5'
5996 5' -60.1 NC_001806.1 + 151534 0.66 0.778151
Target:  5'- aCGGCGC-CCGUGgGCC-CGGGcgGCc -3'
miRNA:   3'- gGCUGCGcGGCACgCGGcGCUCa-UGc -5'
5996 5' -60.1 NC_001806.1 + 147987 0.66 0.778151
Target:  5'- gCCaGACGCcccCCGcgGCGCCGCGGcucGCGa -3'
miRNA:   3'- -GG-CUGCGc--GGCa-CGCGGCGCUca-UGC- -5'
5996 5' -60.1 NC_001806.1 + 144573 0.66 0.778151
Target:  5'- uCCgGGCGCGuCCGgGUGCCGCGGc---- -3'
miRNA:   3'- -GG-CUGCGC-GGCaCGCGGCGCUcaugc -5'
5996 5' -60.1 NC_001806.1 + 50658 0.66 0.778151
Target:  5'- -gGACGCGCaccgGCGCCGgGAcgACGc -3'
miRNA:   3'- ggCUGCGCGgca-CGCGGCgCUcaUGC- -5'
5996 5' -60.1 NC_001806.1 + 42006 0.66 0.778151
Target:  5'- -gGGCuGCuCCGUGCugGCCGCgGGGUugGg -3'
miRNA:   3'- ggCUG-CGcGGCACG--CGGCG-CUCAugC- -5'
5996 5' -60.1 NC_001806.1 + 24224 0.66 0.778151
Target:  5'- gCCGACGgGCCcgcgGUGUCGCGGcaGCa -3'
miRNA:   3'- -GGCUGCgCGGca--CGCGGCGCUcaUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.