miRNA display CGI


Results 1 - 20 of 206 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5997 3' -60.1 NC_001806.1 + 151014 0.66 0.761776
Target:  5'- gGCCgagGCCCag-ACCACCagguggCGCACCCGGa -3'
miRNA:   3'- -UGG---UGGGgcaUGGUGG------GCGUGGGUUc -5'
5997 3' -60.1 NC_001806.1 + 4361 0.66 0.761776
Target:  5'- uGCgGCCCgCGgagGCCGCggggguccucgCCGCcGCCCGGGg -3'
miRNA:   3'- -UGgUGGG-GCa--UGGUG-----------GGCG-UGGGUUC- -5'
5997 3' -60.1 NC_001806.1 + 65978 0.66 0.761776
Target:  5'- -gUACCCUaaACCACCCGCGCUg--- -3'
miRNA:   3'- ugGUGGGGcaUGGUGGGCGUGGguuc -5'
5997 3' -60.1 NC_001806.1 + 21572 0.66 0.761776
Target:  5'- gACCG-CCUGUcGCCgcGCCCGCcgGCCCAGc -3'
miRNA:   3'- -UGGUgGGGCA-UGG--UGGGCG--UGGGUUc -5'
5997 3' -60.1 NC_001806.1 + 84928 0.66 0.761776
Target:  5'- uGCCGCCUCa---CGCCCGCAaaCAGGa -3'
miRNA:   3'- -UGGUGGGGcaugGUGGGCGUggGUUC- -5'
5997 3' -60.1 NC_001806.1 + 143090 0.66 0.761776
Target:  5'- uGCUcuuuCCCCGUGaCACCCGaCGCUgGGGg -3'
miRNA:   3'- -UGGu---GGGGCAUgGUGGGC-GUGGgUUC- -5'
5997 3' -60.1 NC_001806.1 + 148262 0.66 0.761776
Target:  5'- cGCCcccuCCCCGgcCCGCCCuuuccuCGCCCGc- -3'
miRNA:   3'- -UGGu---GGGGCauGGUGGGc-----GUGGGUuc -5'
5997 3' -60.1 NC_001806.1 + 143595 0.66 0.752483
Target:  5'- uACCcaGCCCCGguCC-CCCGUucCCCGGGg -3'
miRNA:   3'- -UGG--UGGGGCauGGuGGGCGu-GGGUUC- -5'
5997 3' -60.1 NC_001806.1 + 22612 0.66 0.752483
Target:  5'- gUCGCCgCCGUcGCCGCCgcCGCACCgGGc -3'
miRNA:   3'- uGGUGG-GGCA-UGGUGG--GCGUGGgUUc -5'
5997 3' -60.1 NC_001806.1 + 99320 0.66 0.752483
Target:  5'- aGCUACCC---GCCuACCCGCGCCUc-- -3'
miRNA:   3'- -UGGUGGGgcaUGG-UGGGCGUGGGuuc -5'
5997 3' -60.1 NC_001806.1 + 105154 0.66 0.752483
Target:  5'- uGCCGCCCCaggGUGCCgaGCCCcagagcaacgcGgGCCCAc- -3'
miRNA:   3'- -UGGUGGGG---CAUGG--UGGG-----------CgUGGGUuc -5'
5997 3' -60.1 NC_001806.1 + 101137 0.66 0.752483
Target:  5'- gGCCAgcaCCCGccCCACCuCGCAgCCAGc -3'
miRNA:   3'- -UGGUg--GGGCauGGUGG-GCGUgGGUUc -5'
5997 3' -60.1 NC_001806.1 + 120896 0.66 0.752483
Target:  5'- gACCuuGCCCCG-GCCGgauuCCCGgGCCgGAGc -3'
miRNA:   3'- -UGG--UGGGGCaUGGU----GGGCgUGGgUUC- -5'
5997 3' -60.1 NC_001806.1 + 109063 0.66 0.752483
Target:  5'- cGCgGCCCCGauaaaCGCCCGCgggGCCCc-- -3'
miRNA:   3'- -UGgUGGGGCaug--GUGGGCG---UGGGuuc -5'
5997 3' -60.1 NC_001806.1 + 7301 0.66 0.74309
Target:  5'- gACCACCCCGagaACCuagggaACCCagaGUACCgCGAGc -3'
miRNA:   3'- -UGGUGGGGCa--UGG------UGGG---CGUGG-GUUC- -5'
5997 3' -60.1 NC_001806.1 + 29409 0.66 0.74309
Target:  5'- cACCAUCCCGaucgugaacgACCcccagACCCGCAUggaggCCGAGg -3'
miRNA:   3'- -UGGUGGGGCa---------UGG-----UGGGCGUG-----GGUUC- -5'
5997 3' -60.1 NC_001806.1 + 123005 0.66 0.74309
Target:  5'- cGCCGCCCauggugaGgcCCGCcgacgccucguCCGCGCCCAc- -3'
miRNA:   3'- -UGGUGGGg------CauGGUG-----------GGCGUGGGUuc -5'
5997 3' -60.1 NC_001806.1 + 123929 0.66 0.733605
Target:  5'- gGCCAaaCUGaACCGCCCGC-CCCu-- -3'
miRNA:   3'- -UGGUggGGCaUGGUGGGCGuGGGuuc -5'
5997 3' -60.1 NC_001806.1 + 121740 0.66 0.733605
Target:  5'- gGCCAUCCCGUGgauacgucacCCugCUGCagGCCCc-- -3'
miRNA:   3'- -UGGUGGGGCAU----------GGugGGCG--UGGGuuc -5'
5997 3' -60.1 NC_001806.1 + 106220 0.66 0.733605
Target:  5'- aGCCGCCuCCGUguuGCUgcguuCCCGgGCCUggGu -3'
miRNA:   3'- -UGGUGG-GGCA---UGGu----GGGCgUGGGuuC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.