miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5998 5' -54.6 NC_001806.1 + 77384 0.66 0.944982
Target:  5'- aCGgGCGCGggcgcgGCGGCcGCGCccGCGc -3'
miRNA:   3'- -GCgCGUGCaaa---CGUCG-CGUGuaCGCu -5'
5998 5' -54.6 NC_001806.1 + 3120 0.66 0.944982
Target:  5'- gGCGCGgGUcccgcgGCAGCGCGgggcccagggccCcgGCGAc -3'
miRNA:   3'- gCGCGUgCAaa----CGUCGCGU------------GuaCGCU- -5'
5998 5' -54.6 NC_001806.1 + 117748 0.66 0.944982
Target:  5'- uGUGCACGUgcGUGGCGUg---GCGAc -3'
miRNA:   3'- gCGCGUGCAaaCGUCGCGuguaCGCU- -5'
5998 5' -54.6 NC_001806.1 + 34307 0.66 0.940354
Target:  5'- aGCG-GCGggggGCGGCGCGCcgGaCGGg -3'
miRNA:   3'- gCGCgUGCaaa-CGUCGCGUGuaC-GCU- -5'
5998 5' -54.6 NC_001806.1 + 51122 0.66 0.939877
Target:  5'- gGCGCACGUgucgGggaGGCGCGCGaccgggcUGgGAg -3'
miRNA:   3'- gCGCGUGCAaa--Cg--UCGCGUGU-------ACgCU- -5'
5998 5' -54.6 NC_001806.1 + 130557 0.66 0.935481
Target:  5'- uCGCGCcgGCGgaaaUUGUcGCGCuCAUGCGc -3'
miRNA:   3'- -GCGCG--UGCa---AACGuCGCGuGUACGCu -5'
5998 5' -54.6 NC_001806.1 + 10100 0.66 0.935481
Target:  5'- aCGUcCACGUacucGCGGCGCACG-GCGc -3'
miRNA:   3'- -GCGcGUGCAaa--CGUCGCGUGUaCGCu -5'
5998 5' -54.6 NC_001806.1 + 132171 0.66 0.935481
Target:  5'- cCGaCGCGCGgcugGCgugGGCGCGCcugGCGGc -3'
miRNA:   3'- -GC-GCGUGCaaa-CG---UCGCGUGua-CGCU- -5'
5998 5' -54.6 NC_001806.1 + 119117 0.66 0.935481
Target:  5'- aCGCGCuacGCGgccgacaGCAcGCGCAuCAUGCGc -3'
miRNA:   3'- -GCGCG---UGCaaa----CGU-CGCGU-GUACGCu -5'
5998 5' -54.6 NC_001806.1 + 91010 0.66 0.935481
Target:  5'- gGCGCgACGgcgGCGGCaaggGCGCGgcggGCGGg -3'
miRNA:   3'- gCGCG-UGCaaaCGUCG----CGUGUa---CGCU- -5'
5998 5' -54.6 NC_001806.1 + 131791 0.66 0.934981
Target:  5'- uCGCGCGCGcUUUGCGGaggucuccgucacCGCgACGgagcUGCGGg -3'
miRNA:   3'- -GCGCGUGC-AAACGUC-------------GCG-UGU----ACGCU- -5'
5998 5' -54.6 NC_001806.1 + 3009 0.66 0.930363
Target:  5'- cCGCcaGCGCGUcgGCGGCGUccgGUGCGc -3'
miRNA:   3'- -GCG--CGUGCAaaCGUCGCGug-UACGCu -5'
5998 5' -54.6 NC_001806.1 + 116143 0.66 0.930363
Target:  5'- uCGCGCcccgaugcgGCGgcgcUGCAGCGC---UGCGAa -3'
miRNA:   3'- -GCGCG---------UGCaa--ACGUCGCGuguACGCU- -5'
5998 5' -54.6 NC_001806.1 + 50582 0.66 0.924999
Target:  5'- cCGUGCugGgcgcUGCGGUGUACGcgcUGCa- -3'
miRNA:   3'- -GCGCGugCaa--ACGUCGCGUGU---ACGcu -5'
5998 5' -54.6 NC_001806.1 + 26807 0.66 0.924999
Target:  5'- gCGCGCcuGCGccUGCGaCGCGCggGCGGg -3'
miRNA:   3'- -GCGCG--UGCaaACGUcGCGUGuaCGCU- -5'
5998 5' -54.6 NC_001806.1 + 24657 0.66 0.924999
Target:  5'- cCGUGUACGUggcgcUGgGGCGCGag-GCGGu -3'
miRNA:   3'- -GCGCGUGCAa----ACgUCGCGUguaCGCU- -5'
5998 5' -54.6 NC_001806.1 + 50418 0.66 0.924999
Target:  5'- gGCGCGCc--UGCAccCGCACGUGCa- -3'
miRNA:   3'- gCGCGUGcaaACGUc-GCGUGUACGcu -5'
5998 5' -54.6 NC_001806.1 + 112709 0.67 0.919389
Target:  5'- uGCGCGCGgaucUGguGUcCAUcgGCGAg -3'
miRNA:   3'- gCGCGUGCaa--ACguCGcGUGuaCGCU- -5'
5998 5' -54.6 NC_001806.1 + 30387 0.67 0.913533
Target:  5'- cCGgGCGCGUgcgacgGUGGCGCGCG-GCu- -3'
miRNA:   3'- -GCgCGUGCAaa----CGUCGCGUGUaCGcu -5'
5998 5' -54.6 NC_001806.1 + 30215 0.67 0.907432
Target:  5'- cCGCGCGCccccgcGCGGCcguggccccGUGCGUGCGAg -3'
miRNA:   3'- -GCGCGUGcaaa--CGUCG---------CGUGUACGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.