miRNA display CGI


Results 1 - 20 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5999 5' -58.7 NC_001806.1 + 133373 0.66 0.85332
Target:  5'- cCCGCGACAacacUGaccaucuugggggauUUCCUCUCCG-CGGGCc -3'
miRNA:   3'- -GGUGCUGU----AC---------------GAGGGGGGGCuGCUCG- -5'
5999 5' -58.7 NC_001806.1 + 9274 0.66 0.850277
Target:  5'- aUCGCGAUuaGCUCgUCUCCGACGuccaccucgccGGCg -3'
miRNA:   3'- -GGUGCUGuaCGAGgGGGGGCUGC-----------UCG- -5'
5999 5' -58.7 NC_001806.1 + 147158 0.66 0.850277
Target:  5'- cCCAgGGCAccgacgGC-CCCgCCCGAgGAGg -3'
miRNA:   3'- -GGUgCUGUa-----CGaGGGgGGGCUgCUCg -5'
5999 5' -58.7 NC_001806.1 + 141753 0.66 0.850277
Target:  5'- uCCACGAaaacacaUCCUCCCgCGGCG-GCa -3'
miRNA:   3'- -GGUGCUguacg--AGGGGGG-GCUGCuCG- -5'
5999 5' -58.7 NC_001806.1 + 9554 0.66 0.850277
Target:  5'- aCCugGuCGcGUUCUCCCUCGcugucCGAGCu -3'
miRNA:   3'- -GGugCuGUaCGAGGGGGGGCu----GCUCG- -5'
5999 5' -58.7 NC_001806.1 + 115007 0.66 0.849511
Target:  5'- aCCugGGCcgcgggGCUCCCCCUcuccuggacaacgCGGC-AGCc -3'
miRNA:   3'- -GGugCUGua----CGAGGGGGG-------------GCUGcUCG- -5'
5999 5' -58.7 NC_001806.1 + 30648 0.66 0.845657
Target:  5'- gCGCGGCcagggugggcccgGgaCCCCCCUGACGuccucGGCg -3'
miRNA:   3'- gGUGCUGua-----------CgaGGGGGGGCUGC-----UCG- -5'
5999 5' -58.7 NC_001806.1 + 114568 0.66 0.84254
Target:  5'- gUCGCGGCAgGUcccccuggUCCCCCCGGCucuggGGGCc -3'
miRNA:   3'- -GGUGCUGUaCGa-------GGGGGGGCUG-----CUCG- -5'
5999 5' -58.7 NC_001806.1 + 52544 0.66 0.84254
Target:  5'- -gACGACGUGgUCCgcggggccuCCCCCgGACGAcaugGCc -3'
miRNA:   3'- ggUGCUGUACgAGG---------GGGGG-CUGCU----CG- -5'
5999 5' -58.7 NC_001806.1 + 41526 0.66 0.84254
Target:  5'- gCGCGGCAaaUGC-CUgUCCCGugGGGa -3'
miRNA:   3'- gGUGCUGU--ACGaGGgGGGGCugCUCg -5'
5999 5' -58.7 NC_001806.1 + 80315 0.66 0.84254
Target:  5'- cCCACcACAucUGCgCgCCCCCGG-GGGCa -3'
miRNA:   3'- -GGUGcUGU--ACGaGgGGGGGCUgCUCG- -5'
5999 5' -58.7 NC_001806.1 + 88954 0.66 0.84254
Target:  5'- gCCGgGGCGUGgUCCacgccgCCCCacaggcGCGAGCg -3'
miRNA:   3'- -GGUgCUGUACgAGGg-----GGGGc-----UGCUCG- -5'
5999 5' -58.7 NC_001806.1 + 99974 0.66 0.841756
Target:  5'- gCGCGGCGcGCcucgagCCUCCCCGggguaguACGGGUa -3'
miRNA:   3'- gGUGCUGUaCGa-----GGGGGGGC-------UGCUCG- -5'
5999 5' -58.7 NC_001806.1 + 73266 0.66 0.837812
Target:  5'- gCCACGGCgguuaaguucaccgcGUGCUCCgCCgCCCuggcccGCGAGg -3'
miRNA:   3'- -GGUGCUG---------------UACGAGG-GG-GGGc-----UGCUCg -5'
5999 5' -58.7 NC_001806.1 + 46653 0.66 0.833823
Target:  5'- uCUGCGGCGUcGCgCCCCaCCGAgcgaccuCGAGCc -3'
miRNA:   3'- -GGUGCUGUA-CGaGGGGgGGCU-------GCUCG- -5'
5999 5' -58.7 NC_001806.1 + 76015 0.66 0.832216
Target:  5'- aCGcCGACAUGUUUCggguggacaccgagCCCCUGGCGcGGCu -3'
miRNA:   3'- gGU-GCUGUACGAGG--------------GGGGGCUGC-UCG- -5'
5999 5' -58.7 NC_001806.1 + 119943 0.66 0.826537
Target:  5'- aCGCGuCGUGCgCCCCcaccagcugucuCCCGcUGGGCa -3'
miRNA:   3'- gGUGCuGUACGaGGGG------------GGGCuGCUCG- -5'
5999 5' -58.7 NC_001806.1 + 106056 0.66 0.826537
Target:  5'- aCCACGGCcgaGUUUCCgcgggaCCCCGGCcAGCu -3'
miRNA:   3'- -GGUGCUGua-CGAGGG------GGGGCUGcUCG- -5'
5999 5' -58.7 NC_001806.1 + 78519 0.66 0.826537
Target:  5'- aUCugGGCAgacGCUgagCCCCUCgGGgGGGCg -3'
miRNA:   3'- -GGugCUGUa--CGA---GGGGGGgCUgCUCG- -5'
5999 5' -58.7 NC_001806.1 + 46205 0.66 0.826537
Target:  5'- -gGCGACuaagGCcCCCgcggCCCCGGCG-GCg -3'
miRNA:   3'- ggUGCUGua--CGaGGG----GGGGCUGCuCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.