miRNA display CGI


Results 1 - 20 of 212 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6002 3' -63.4 NC_001806.1 + 52865 0.66 0.61195
Target:  5'- aCCCGAca--GGCGAcCGCCG-GCGGCg -3'
miRNA:   3'- cGGGCUcgacCCGCU-GCGGCgCGUCG- -5'
6002 3' -63.4 NC_001806.1 + 100764 0.66 0.61195
Target:  5'- aGCgCGAGCUcggccucGGCGGCcagucGCCGCGCcccucGCg -3'
miRNA:   3'- -CGgGCUCGAc------CCGCUG-----CGGCGCGu----CG- -5'
6002 3' -63.4 NC_001806.1 + 87666 0.66 0.61195
Target:  5'- gGCCCGgcGGCguaguagGcGGgGAUGUCGCGaUAGCu -3'
miRNA:   3'- -CGGGC--UCGa------C-CCgCUGCGGCGC-GUCG- -5'
6002 3' -63.4 NC_001806.1 + 73551 0.66 0.61195
Target:  5'- cGCCUGAGcCUGGccgaCGugGCCGCcCAucuGCc -3'
miRNA:   3'- -CGGGCUC-GACCc---GCugCGGCGcGU---CG- -5'
6002 3' -63.4 NC_001806.1 + 2617 0.66 0.61195
Target:  5'- gGUCCguGAGCUcGGCcACGgCGCGCGGg -3'
miRNA:   3'- -CGGG--CUCGAcCCGcUGCgGCGCGUCg -5'
6002 3' -63.4 NC_001806.1 + 24356 0.66 0.61098
Target:  5'- gGCCCGg---GGGUcuucgcgcgcgugGAgGCCGCGCAcGCg -3'
miRNA:   3'- -CGGGCucgaCCCG-------------CUgCGGCGCGU-CG- -5'
6002 3' -63.4 NC_001806.1 + 83799 0.66 0.602259
Target:  5'- gGCCUccggGGGCgaggaggGGGCGGgGUCGgCGCGGg -3'
miRNA:   3'- -CGGG----CUCGa------CCCGCUgCGGC-GCGUCg -5'
6002 3' -63.4 NC_001806.1 + 35516 0.66 0.602259
Target:  5'- cGUCgGAGCgGGGCcGCucacgccaaGCCGCcCAGCg -3'
miRNA:   3'- -CGGgCUCGaCCCGcUG---------CGGCGcGUCG- -5'
6002 3' -63.4 NC_001806.1 + 50799 0.66 0.602259
Target:  5'- cCCCGAGgUGGGC-ACGUacaccccccUGCGCuacGCg -3'
miRNA:   3'- cGGGCUCgACCCGcUGCG---------GCGCGu--CG- -5'
6002 3' -63.4 NC_001806.1 + 135537 0.66 0.602259
Target:  5'- cGCCCccGCaGGGCGGCuGCCGCauccacCGGUc -3'
miRNA:   3'- -CGGGcuCGaCCCGCUG-CGGCGc-----GUCG- -5'
6002 3' -63.4 NC_001806.1 + 4119 0.66 0.602259
Target:  5'- cGCCuCGGGCgccccccagaggcccGGGCGGCugucgcccaggccGCCGUaCAGCa -3'
miRNA:   3'- -CGG-GCUCGa--------------CCCGCUG-------------CGGCGcGUCG- -5'
6002 3' -63.4 NC_001806.1 + 25525 0.66 0.602259
Target:  5'- cGCgCCGGGgaGGGCuGGgGCCGgGgAGg -3'
miRNA:   3'- -CG-GGCUCgaCCCG-CUgCGGCgCgUCg -5'
6002 3' -63.4 NC_001806.1 + 25649 0.66 0.601291
Target:  5'- gGCUgGGGCUggggaggGGGCGGUGgUGUGUAGCa -3'
miRNA:   3'- -CGGgCUCGA-------CCCGCUGCgGCGCGUCG- -5'
6002 3' -63.4 NC_001806.1 + 40557 0.66 0.592589
Target:  5'- --gUGGGCgGGGCGugaaaauggaaGCGCCGCGgguCGGCg -3'
miRNA:   3'- cggGCUCGaCCCGC-----------UGCGGCGC---GUCG- -5'
6002 3' -63.4 NC_001806.1 + 98583 0.66 0.592589
Target:  5'- cUUCGAGgggaUGGGCGACcuggGgCGCGCGGUc -3'
miRNA:   3'- cGGGCUCg---ACCCGCUG----CgGCGCGUCG- -5'
6002 3' -63.4 NC_001806.1 + 128283 0.66 0.586799
Target:  5'- gGCgCGAGCcGGGcCGACGaCGCGaugaugggucggggcCAGCu -3'
miRNA:   3'- -CGgGCUCGaCCC-GCUGCgGCGC---------------GUCG- -5'
6002 3' -63.4 NC_001806.1 + 85734 0.66 0.582944
Target:  5'- cCCCGAaccCUGcGGUccGGaGCCGCGCGGCc -3'
miRNA:   3'- cGGGCUc--GAC-CCG--CUgCGGCGCGUCG- -5'
6002 3' -63.4 NC_001806.1 + 119473 0.66 0.582944
Target:  5'- gGUCCGAGCgcggaccGGGCG-UGCgGCcuGUGGCg -3'
miRNA:   3'- -CGGGCUCGa------CCCGCuGCGgCG--CGUCG- -5'
6002 3' -63.4 NC_001806.1 + 79063 0.66 0.582944
Target:  5'- uCCCGuuuguGGC-GGGCGGCgaggacguccucGCCGC-CAGCg -3'
miRNA:   3'- cGGGC-----UCGaCCCGCUG------------CGGCGcGUCG- -5'
6002 3' -63.4 NC_001806.1 + 17825 0.66 0.582944
Target:  5'- uGCCCGAGUggaccGuGGCGugGaccCCGUuccccGCGGCc -3'
miRNA:   3'- -CGGGCUCGa----C-CCGCugC---GGCG-----CGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.