miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6101 3' -50.8 NC_001826.1 + 70708 0.66 0.967459
Target:  5'- cAGGAGcGGGAGcuuuggcGGGGGUgCUGg -3'
miRNA:   3'- uUUCUCcCCCUCu------CCCCCA-GAC- -5'
6101 3' -50.8 NC_001826.1 + 16777 0.66 0.967459
Target:  5'- uGAGAGGGGu--GGGGGaGUCUc -3'
miRNA:   3'- uUUCUCCCCcucUCCCC-CAGAc -5'
6101 3' -50.8 NC_001826.1 + 69998 0.66 0.963963
Target:  5'- -uGGAGGuGGGAGguucugcuguaGGGGGaGUCa- -3'
miRNA:   3'- uuUCUCC-CCCUC-----------UCCCC-CAGac -5'
6101 3' -50.8 NC_001826.1 + 26482 0.66 0.963963
Target:  5'- gAAAGGGuGGGGcuaaaAGGGGGGGa--- -3'
miRNA:   3'- -UUUCUC-CCCC-----UCUCCCCCagac -5'
6101 3' -50.8 NC_001826.1 + 103966 0.66 0.963963
Target:  5'- ---uAGGGGGcucuGuAGGGGGcUCUGg -3'
miRNA:   3'- uuucUCCCCCu---C-UCCCCC-AGAC- -5'
6101 3' -50.8 NC_001826.1 + 118222 0.67 0.947371
Target:  5'- -cAGGGcucGGGAGuGGGGGGUgCUGg -3'
miRNA:   3'- uuUCUCc--CCCUC-UCCCCCA-GAC- -5'
6101 3' -50.8 NC_001826.1 + 104546 0.67 0.936914
Target:  5'- uGAAGGGGGcacugguGGuGAugGGGGGUUUGg -3'
miRNA:   3'- -UUUCUCCC-------CCuCU--CCCCCAGAC- -5'
6101 3' -50.8 NC_001826.1 + 118889 0.67 0.932055
Target:  5'- gGGGGucGGGGGcGGGGGGGcUCg- -3'
miRNA:   3'- -UUUCu-CCCCCuCUCCCCC-AGac -5'
6101 3' -50.8 NC_001826.1 + 118859 0.68 0.926387
Target:  5'- -cAGGGGGGaAGAGGGGcUCg- -3'
miRNA:   3'- uuUCUCCCCcUCUCCCCcAGac -5'
6101 3' -50.8 NC_001826.1 + 104399 0.68 0.926387
Target:  5'- -uGGAGGGGGAccGGGaucGUCUGu -3'
miRNA:   3'- uuUCUCCCCCUcuCCCc--CAGAC- -5'
6101 3' -50.8 NC_001826.1 + 118582 0.68 0.926387
Target:  5'- ---aGGGGGGAGGGGcacGGUCa- -3'
miRNA:   3'- uuucUCCCCCUCUCCc--CCAGac -5'
6101 3' -50.8 NC_001826.1 + 116883 0.68 0.919825
Target:  5'- uGAGAGGGGGcGAGGaugaacaggcccaGGGUugaCUGg -3'
miRNA:   3'- uUUCUCCCCCuCUCC-------------CCCA---GAC- -5'
6101 3' -50.8 NC_001826.1 + 70328 0.69 0.896692
Target:  5'- uGGGAGGGgugaguucgacgguaGGGGAGGcGGGaUCUGu -3'
miRNA:   3'- uUUCUCCC---------------CCUCUCC-CCC-AGAC- -5'
6101 3' -50.8 NC_001826.1 + 118582 0.69 0.893832
Target:  5'- uGGGGucGGGGGAGuGGGGG-Cg- -3'
miRNA:   3'- -UUUCu-CCCCCUCuCCCCCaGac -5'
6101 3' -50.8 NC_001826.1 + 118531 0.69 0.893832
Target:  5'- cGGAGGGGcGGGGGuccggggggcGGGGGuGUCUa -3'
miRNA:   3'- -UUUCUCC-CCCUC----------UCCCC-CAGAc -5'
6101 3' -50.8 NC_001826.1 + 118821 0.7 0.854553
Target:  5'- cGGGGAGGGGGGccgggcGGGGGGagUGc -3'
miRNA:   3'- -UUUCUCCCCCUc-----UCCCCCagAC- -5'
6101 3' -50.8 NC_001826.1 + 72594 0.7 0.837124
Target:  5'- uAGGGAGGGGc---GGGGGUUUGg -3'
miRNA:   3'- -UUUCUCCCCcucuCCCCCAGAC- -5'
6101 3' -50.8 NC_001826.1 + 27637 0.72 0.759422
Target:  5'- -cGGAGGGGGccGGGGaGGUCg- -3'
miRNA:   3'- uuUCUCCCCCucUCCC-CCAGac -5'
6101 3' -50.8 NC_001826.1 + 27757 0.73 0.706165
Target:  5'- cGGGAGGGGGccGGGGaGGUCg- -3'
miRNA:   3'- uUUCUCCCCCucUCCC-CCAGac -5'
6101 3' -50.8 NC_001826.1 + 28090 0.73 0.706165
Target:  5'- cGGGAGGGGGccGGGGaGGUCg- -3'
miRNA:   3'- uUUCUCCCCCucUCCC-CCAGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.