miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6111 5' -52.6 NC_001826.1 + 94766 0.66 0.967116
Target:  5'- -aUGGUGGGA-AGGUaUGcuacgGGGGAGCCu -3'
miRNA:   3'- cgACCGCUCUgUCCA-ACa----CCUUUCGG- -5'
6111 5' -52.6 NC_001826.1 + 98881 0.66 0.967116
Target:  5'- --gGGCGGGAUGGGggGaaccggggGGAcgGGGCCc -3'
miRNA:   3'- cgaCCGCUCUGUCCaaCa-------CCU--UUCGG- -5'
6111 5' -52.6 NC_001826.1 + 118575 0.66 0.963755
Target:  5'- --gGGgGAGugGGGgcGgGGAGGGCg -3'
miRNA:   3'- cgaCCgCUCugUCCaaCaCCUUUCGg -5'
6111 5' -52.6 NC_001826.1 + 48954 0.66 0.963755
Target:  5'- gGCUGGCuguguuuGACAcGUggGUGGGuuuGAGCCu -3'
miRNA:   3'- -CGACCGcu-----CUGUcCAa-CACCU---UUCGG- -5'
6111 5' -52.6 NC_001826.1 + 1946 0.66 0.960161
Target:  5'- uUUGGUggGAGGCuagauGGUcGUGGgcGGCCu -3'
miRNA:   3'- cGACCG--CUCUGu----CCAaCACCuuUCGG- -5'
6111 5' -52.6 NC_001826.1 + 100080 0.66 0.956328
Target:  5'- --cGGCGGGAUGGGggGaaccggggGGAcgGGGCCc -3'
miRNA:   3'- cgaCCGCUCUGUCCaaCa-------CCU--UUCGG- -5'
6111 5' -52.6 NC_001826.1 + 87679 0.66 0.956328
Target:  5'- aGCUGGUccacgGcAGcCAGGUUGgGGAGGGUg -3'
miRNA:   3'- -CGACCG-----C-UCuGUCCAACaCCUUUCGg -5'
6111 5' -52.6 NC_001826.1 + 100979 0.66 0.956328
Target:  5'- --cGGCGGGAUGGGggGaaccggggGGAcgGGGCCc -3'
miRNA:   3'- cgaCCGCUCUGUCCaaCa-------CCU--UUCGG- -5'
6111 5' -52.6 NC_001826.1 + 100879 0.66 0.956328
Target:  5'- --cGGCGGGAUGGGggGaaccggggGGAcgGGGCCc -3'
miRNA:   3'- cgaCCGCUCUGUCCaaCa-------CCU--UUCGG- -5'
6111 5' -52.6 NC_001826.1 + 100680 0.66 0.956328
Target:  5'- --cGGCGGGAUGGGggGaaccggggGGAcgGGGCCc -3'
miRNA:   3'- cgaCCGCUCUGUCCaaCa-------CCU--UUCGG- -5'
6111 5' -52.6 NC_001826.1 + 100580 0.66 0.956328
Target:  5'- --cGGCGGGAUGGGggGaaccggggGGAcgGGGCCc -3'
miRNA:   3'- cgaCCGCUCUGUCCaaCa-------CCU--UUCGG- -5'
6111 5' -52.6 NC_001826.1 + 100480 0.66 0.956328
Target:  5'- --cGGCGGGAUGGGggGaaccggggGGAcgGGGCCc -3'
miRNA:   3'- cgaCCGCUCUGUCCaaCa-------CCU--UUCGG- -5'
6111 5' -52.6 NC_001826.1 + 100380 0.66 0.956328
Target:  5'- --cGGCGGGAUGGGggGaaccggggGGAcgGGGCCc -3'
miRNA:   3'- cgaCCGCUCUGUCCaaCa-------CCU--UUCGG- -5'
6111 5' -52.6 NC_001826.1 + 100280 0.66 0.956328
Target:  5'- --cGGCGGGAUGGGggGaaccggggGGAcgGGGCCc -3'
miRNA:   3'- cgaCCGCUCUGUCCaaCa-------CCU--UUCGG- -5'
6111 5' -52.6 NC_001826.1 + 100180 0.66 0.956328
Target:  5'- --cGGCGGGAUGGGggGaaccggggGGAcgGGGCCc -3'
miRNA:   3'- cgaCCGCUCUGUCCaaCa-------CCU--UUCGG- -5'
6111 5' -52.6 NC_001826.1 + 99980 0.66 0.956328
Target:  5'- --cGGCGGGAUGGGggGaaccggggGGAcgGGGCCc -3'
miRNA:   3'- cgaCCGCUCUGUCCaaCa-------CCU--UUCGG- -5'
6111 5' -52.6 NC_001826.1 + 99880 0.66 0.956328
Target:  5'- --cGGCGGGAUGGGggGaaccggggGGAcgGGGCCc -3'
miRNA:   3'- cgaCCGCUCUGUCCaaCa-------CCU--UUCGG- -5'
6111 5' -52.6 NC_001826.1 + 99681 0.66 0.956328
Target:  5'- --cGGCGGGAUGGGggGaaccggggGGAcgGGGCCc -3'
miRNA:   3'- cgaCCGCUCUGUCCaaCa-------CCU--UUCGG- -5'
6111 5' -52.6 NC_001826.1 + 99581 0.66 0.956328
Target:  5'- --cGGCGGGAUGGGggGaaccggggGGAcgGGGCCc -3'
miRNA:   3'- cgaCCGCUCUGUCCaaCa-------CCU--UUCGG- -5'
6111 5' -52.6 NC_001826.1 + 99481 0.66 0.956328
Target:  5'- --cGGCGGGAUGGGggGaaccggggGGAcgGGGCCc -3'
miRNA:   3'- cgaCCGCUCUGUCCaaCa-------CCU--UUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.