Results 1 - 20 of 79 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6112 | 3' | -61.3 | NC_001826.1 | + | 73250 | 0.66 | 0.608429 |
Target: 5'- cCCCGGGGGUguuggCGGCCgaccugauuagGAGC-ACCa-- -3' miRNA: 3'- -GGGUCCCCA-----GCCGGa----------CUCGaUGGgug -5' |
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6112 | 3' | -61.3 | NC_001826.1 | + | 100796 | 0.66 | 0.609431 |
Target: 5'- aCCGGGGGacggGGCCccggagcgagggagcGGGCUGCCCg- -3' miRNA: 3'- gGGUCCCCag--CCGGa--------------CUCGAUGGGug -5' |
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6112 | 3' | -61.3 | NC_001826.1 | + | 99797 | 0.66 | 0.609431 |
Target: 5'- aCCGGGGGacggGGCCccggagcgagggagcGGGCUGCCCg- -3' miRNA: 3'- gGGUCCCCag--CCGGa--------------CUCGAUGGGug -5' |
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6112 | 3' | -61.3 | NC_001826.1 | + | 19543 | 0.66 | 0.618455 |
Target: 5'- gUCCAGGGGggCuGCCcGGGCUGCa-GCg -3' miRNA: 3'- -GGGUCCCCa-GcCGGaCUCGAUGggUG- -5' |
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6112 | 3' | -61.3 | NC_001826.1 | + | 5816 | 0.66 | 0.628491 |
Target: 5'- aCCGGGGGU-GGCgUaucGGCUGCUUGCa -3' miRNA: 3'- gGGUCCCCAgCCGgAc--UCGAUGGGUG- -5' |
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6112 | 3' | -61.3 | NC_001826.1 | + | 100837 | 0.67 | 0.539089 |
Target: 5'- gCCC-GGGGUgcggguccccCGGCCUGGGgaGCCgGu -3' miRNA: 3'- -GGGuCCCCA----------GCCGGACUCgaUGGgUg -5' |
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6112 | 3' | -61.3 | NC_001826.1 | + | 99239 | 0.67 | 0.539089 |
Target: 5'- gCCC-GGGGUgcggguccccCGGCCUGGGgaGCCgGu -3' miRNA: 3'- -GGGuCCCCA----------GCCGGACUCgaUGGgUg -5' |
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6112 | 3' | -61.3 | NC_001826.1 | + | 99439 | 0.67 | 0.539089 |
Target: 5'- gCCC-GGGGUgcggguccccCGGCCUGGGgaGCCgGu -3' miRNA: 3'- -GGGuCCCCA----------GCCGGACUCgaUGGgUg -5' |
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6112 | 3' | -61.3 | NC_001826.1 | + | 99639 | 0.67 | 0.539089 |
Target: 5'- gCCC-GGGGUgcggguccccCGGCCUGGGgaGCCgGu -3' miRNA: 3'- -GGGuCCCCA----------GCCGGACUCgaUGGgUg -5' |
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6112 | 3' | -61.3 | NC_001826.1 | + | 99739 | 0.67 | 0.539089 |
Target: 5'- gCCC-GGGGUgcggguccccCGGCCUGGGgaGCCgGu -3' miRNA: 3'- -GGGuCCCCA----------GCCGGACUCgaUGGgUg -5' |
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6112 | 3' | -61.3 | NC_001826.1 | + | 100038 | 0.67 | 0.539089 |
Target: 5'- gCCC-GGGGUgcggguccccCGGCCUGGGgaGCCgGu -3' miRNA: 3'- -GGGuCCCCA----------GCCGGACUCgaUGGgUg -5' |
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6112 | 3' | -61.3 | NC_001826.1 | + | 100638 | 0.67 | 0.539089 |
Target: 5'- gCCC-GGGGUgcggguccccCGGCCUGGGgaGCCgGu -3' miRNA: 3'- -GGGuCCCCA----------GCCGGACUCgaUGGgUg -5' |
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6112 | 3' | -61.3 | NC_001826.1 | + | 100538 | 0.67 | 0.539089 |
Target: 5'- gCCC-GGGGUgcggguccccCGGCCUGGGgaGCCgGu -3' miRNA: 3'- -GGGuCCCCA----------GCCGGACUCgaUGGgUg -5' |
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6112 | 3' | -61.3 | NC_001826.1 | + | 100238 | 0.67 | 0.539089 |
Target: 5'- gCCC-GGGGUgcggguccccCGGCCUGGGgaGCCgGu -3' miRNA: 3'- -GGGuCCCCA----------GCCGGACUCgaUGGgUg -5' |
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6112 | 3' | -61.3 | NC_001826.1 | + | 99938 | 0.67 | 0.539089 |
Target: 5'- gCCC-GGGGUgcggguccccCGGCCUGGGgaGCCgGu -3' miRNA: 3'- -GGGuCCCCA----------GCCGGACUCgaUGGgUg -5' |
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6112 | 3' | -61.3 | NC_001826.1 | + | 100738 | 0.67 | 0.539089 |
Target: 5'- gCCC-GGGGUgcggguccccCGGCCUGGGgaGCCgGu -3' miRNA: 3'- -GGGuCCCCA----------GCCGGACUCgaUGGgUg -5' |
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6112 | 3' | -61.3 | NC_001826.1 | + | 100438 | 0.67 | 0.539089 |
Target: 5'- gCCC-GGGGUgcggguccccCGGCCUGGGgaGCCgGu -3' miRNA: 3'- -GGGuCCCCA----------GCCGGACUCgaUGGgUg -5' |
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6112 | 3' | -61.3 | NC_001826.1 | + | 99838 | 0.67 | 0.539089 |
Target: 5'- gCCC-GGGGUgcggguccccCGGCCUGGGgaGCCgGu -3' miRNA: 3'- -GGGuCCCCA----------GCCGGACUCgaUGGgUg -5' |
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6112 | 3' | -61.3 | NC_001826.1 | + | 100338 | 0.67 | 0.539089 |
Target: 5'- gCCC-GGGGUgcggguccccCGGCCUGGGgaGCCgGu -3' miRNA: 3'- -GGGuCCCCA----------GCCGGACUCgaUGGgUg -5' |
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6112 | 3' | -61.3 | NC_001826.1 | + | 99339 | 0.67 | 0.539089 |
Target: 5'- gCCC-GGGGUgcggguccccCGGCCUGGGgaGCCgGu -3' miRNA: 3'- -GGGuCCCCA----------GCCGGACUCgaUGGgUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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