miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6112 3' -61.3 NC_001826.1 + 5816 0.66 0.628491
Target:  5'- aCCGGGGGU-GGCgUaucGGCUGCUUGCa -3'
miRNA:   3'- gGGUCCCCAgCCGgAc--UCGAUGGGUG- -5'
6112 3' -61.3 NC_001826.1 + 8732 0.69 0.463472
Target:  5'- cUCCAGGGGUgGGUgUGgcuaGGCUGacgaCCGCc -3'
miRNA:   3'- -GGGUCCCCAgCCGgAC----UCGAUg---GGUG- -5'
6112 3' -61.3 NC_001826.1 + 19543 0.66 0.618455
Target:  5'- gUCCAGGGGggCuGCCcGGGCUGCa-GCg -3'
miRNA:   3'- -GGGUCCCCa-GcCGGaCUCGAUGggUG- -5'
6112 3' -61.3 NC_001826.1 + 28638 0.69 0.463472
Target:  5'- uCCCGcGGGG-CGGCCgccGCgccuccACCCACg -3'
miRNA:   3'- -GGGU-CCCCaGCCGGacuCGa-----UGGGUG- -5'
6112 3' -61.3 NC_001826.1 + 29095 1 0.003207
Target:  5'- cCCCAGGGGcUGGCCUGAGCUACCCACa -3'
miRNA:   3'- -GGGUCCCCaGCCGGACUCGAUGGGUG- -5'
6112 3' -61.3 NC_001826.1 + 73250 0.66 0.608429
Target:  5'- cCCCGGGGGUguuggCGGCCgaccugauuagGAGC-ACCa-- -3'
miRNA:   3'- -GGGUCCCCA-----GCCGGa----------CUCGaUGGgug -5'
6112 3' -61.3 NC_001826.1 + 98897 0.68 0.482818
Target:  5'- aCCGGGGGgacggGGCCccggagcgagggagcGGGCUGCCCGg -3'
miRNA:   3'- gGGUCCCCag---CCGGa--------------CUCGAUGGGUg -5'
6112 3' -61.3 NC_001826.1 + 98939 0.67 0.539089
Target:  5'- gCCC-GGGGUgcggguccccCGGCCUGGGgaGCCgGu -3'
miRNA:   3'- -GGGuCCCCA----------GCCGGACUCgaUGGgUg -5'
6112 3' -61.3 NC_001826.1 + 98997 0.68 0.482818
Target:  5'- aCCGGGGGgacggGGCCccggagcgagggagcGGGCUGCCCGg -3'
miRNA:   3'- gGGUCCCCag---CCGGa--------------CUCGAUGGGUg -5'
6112 3' -61.3 NC_001826.1 + 99039 0.67 0.539089
Target:  5'- gCCC-GGGGUgcggguccccCGGCCUGGGgaGCCgGu -3'
miRNA:   3'- -GGGuCCCCA----------GCCGGACUCgaUGGgUg -5'
6112 3' -61.3 NC_001826.1 + 99080 0.67 0.529377
Target:  5'- gCCGGGGGaCccgcaccccgGGCC-GGGCaGCCCGCu -3'
miRNA:   3'- gGGUCCCCaG----------CCGGaCUCGaUGGGUG- -5'
6112 3' -61.3 NC_001826.1 + 99097 0.68 0.482818
Target:  5'- aCCGGGGGgacggGGCCccggagcgagggagcGGGCUGCCCGg -3'
miRNA:   3'- gGGUCCCCag---CCGGa--------------CUCGAUGGGUg -5'
6112 3' -61.3 NC_001826.1 + 99139 0.67 0.539089
Target:  5'- gCCC-GGGGUgcggguccccCGGCCUGGGgaGCCgGu -3'
miRNA:   3'- -GGGuCCCCA----------GCCGGACUCgaUGGgUg -5'
6112 3' -61.3 NC_001826.1 + 99180 0.67 0.529377
Target:  5'- gCCGGGGGaCccgcaccccgGGCC-GGGCaGCCCGCu -3'
miRNA:   3'- gGGUCCCCaG----------CCGGaCUCGaUGGGUG- -5'
6112 3' -61.3 NC_001826.1 + 99197 0.68 0.482818
Target:  5'- aCCGGGGGgacggGGCCccggagcgagggagcGGGCUGCCCGg -3'
miRNA:   3'- gGGUCCCCag---CCGGa--------------CUCGAUGGGUg -5'
6112 3' -61.3 NC_001826.1 + 99239 0.67 0.539089
Target:  5'- gCCC-GGGGUgcggguccccCGGCCUGGGgaGCCgGu -3'
miRNA:   3'- -GGGuCCCCA----------GCCGGACUCgaUGGgUg -5'
6112 3' -61.3 NC_001826.1 + 99280 0.67 0.529377
Target:  5'- gCCGGGGGaCccgcaccccgGGCC-GGGCaGCCCGCu -3'
miRNA:   3'- gGGUCCCCaG----------CCGGaCUCGaUGGGUG- -5'
6112 3' -61.3 NC_001826.1 + 99297 0.68 0.482818
Target:  5'- aCCGGGGGgacggGGCCccggagcgagggagcGGGCUGCCCGg -3'
miRNA:   3'- gGGUCCCCag---CCGGa--------------CUCGAUGGGUg -5'
6112 3' -61.3 NC_001826.1 + 99339 0.67 0.539089
Target:  5'- gCCC-GGGGUgcggguccccCGGCCUGGGgaGCCgGu -3'
miRNA:   3'- -GGGuCCCCA----------GCCGGACUCgaUGGgUg -5'
6112 3' -61.3 NC_001826.1 + 99380 0.67 0.529377
Target:  5'- gCCGGGGGaCccgcaccccgGGCC-GGGCaGCCCGCu -3'
miRNA:   3'- gGGUCCCCaG----------CCGGaCUCGaUGGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.