Results 1 - 20 of 79 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6112 | 3' | -61.3 | NC_001826.1 | + | 29095 | 1 | 0.003207 |
Target: 5'- cCCCAGGGGcUGGCCUGAGCUACCCACa -3' miRNA: 3'- -GGGUCCCCaGCCGGACUCGAUGGGUG- -5' |
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6112 | 3' | -61.3 | NC_001826.1 | + | 118973 | 0.72 | 0.302841 |
Target: 5'- gCCCGGGcGGUagCGGCCgcgccugGGGCgccaugcGCCCGCg -3' miRNA: 3'- -GGGUCC-CCA--GCCGGa------CUCGa------UGGGUG- -5' |
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6112 | 3' | -61.3 | NC_001826.1 | + | 101037 | 0.7 | 0.393783 |
Target: 5'- gCCC-GGGGUgcggguccccCGGCCUGGGgaGCCaaaGCg -3' miRNA: 3'- -GGGuCCCCA----------GCCGGACUCgaUGGg--UG- -5' |
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6112 | 3' | -61.3 | NC_001826.1 | + | 28638 | 0.69 | 0.463472 |
Target: 5'- uCCCGcGGGG-CGGCCgccGCgccuccACCCACg -3' miRNA: 3'- -GGGU-CCCCaGCCGGacuCGa-----UGGGUG- -5' |
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6112 | 3' | -61.3 | NC_001826.1 | + | 8732 | 0.69 | 0.463472 |
Target: 5'- cUCCAGGGGUgGGUgUGgcuaGGCUGacgaCCGCc -3' miRNA: 3'- -GGGUCCCCAgCCGgAC----UCGAUg---GGUG- -5' |
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6112 | 3' | -61.3 | NC_001826.1 | + | 118742 | 0.68 | 0.472634 |
Target: 5'- cCCCGGGGGUCGG---GGGUc-CCCGCu -3' miRNA: 3'- -GGGUCCCCAGCCggaCUCGauGGGUG- -5' |
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6112 | 3' | -61.3 | NC_001826.1 | + | 100196 | 0.68 | 0.482818 |
Target: 5'- aCCGGGGGgacggGGCCccggagcgagggagcGGGCUGCCCGg -3' miRNA: 3'- gGGUCCCCag---CCGGa--------------CUCGAUGGGUg -5' |
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6112 | 3' | -61.3 | NC_001826.1 | + | 100396 | 0.68 | 0.482818 |
Target: 5'- aCCGGGGGgacggGGCCccggagcgagggagcGGGCUGCCCGg -3' miRNA: 3'- gGGUCCCCag---CCGGa--------------CUCGAUGGGUg -5' |
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6112 | 3' | -61.3 | NC_001826.1 | + | 100496 | 0.68 | 0.482818 |
Target: 5'- aCCGGGGGgacggGGCCccggagcgagggagcGGGCUGCCCGg -3' miRNA: 3'- gGGUCCCCag---CCGGa--------------CUCGAUGGGUg -5' |
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6112 | 3' | -61.3 | NC_001826.1 | + | 100596 | 0.68 | 0.482818 |
Target: 5'- aCCGGGGGgacggGGCCccggagcgagggagcGGGCUGCCCGg -3' miRNA: 3'- gGGUCCCCag---CCGGa--------------CUCGAUGGGUg -5' |
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6112 | 3' | -61.3 | NC_001826.1 | + | 100696 | 0.68 | 0.482818 |
Target: 5'- aCCGGGGGgacggGGCCccggagcgagggagcGGGCUGCCCGg -3' miRNA: 3'- gGGUCCCCag---CCGGa--------------CUCGAUGGGUg -5' |
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6112 | 3' | -61.3 | NC_001826.1 | + | 100096 | 0.68 | 0.482818 |
Target: 5'- aCCGGGGGgacggGGCCccggagcgagggagcGGGCUGCCCGg -3' miRNA: 3'- gGGUCCCCag---CCGGa--------------CUCGAUGGGUg -5' |
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6112 | 3' | -61.3 | NC_001826.1 | + | 99996 | 0.68 | 0.482818 |
Target: 5'- aCCGGGGGgacggGGCCccggagcgagggagcGGGCUGCCCGg -3' miRNA: 3'- gGGUCCCCag---CCGGa--------------CUCGAUGGGUg -5' |
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6112 | 3' | -61.3 | NC_001826.1 | + | 99896 | 0.68 | 0.482818 |
Target: 5'- aCCGGGGGgacggGGCCccggagcgagggagcGGGCUGCCCGg -3' miRNA: 3'- gGGUCCCCag---CCGGa--------------CUCGAUGGGUg -5' |
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6112 | 3' | -61.3 | NC_001826.1 | + | 99697 | 0.68 | 0.482818 |
Target: 5'- aCCGGGGGgacggGGCCccggagcgagggagcGGGCUGCCCGg -3' miRNA: 3'- gGGUCCCCag---CCGGa--------------CUCGAUGGGUg -5' |
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6112 | 3' | -61.3 | NC_001826.1 | + | 99597 | 0.68 | 0.482818 |
Target: 5'- aCCGGGGGgacggGGCCccggagcgagggagcGGGCUGCCCGg -3' miRNA: 3'- gGGUCCCCag---CCGGa--------------CUCGAUGGGUg -5' |
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6112 | 3' | -61.3 | NC_001826.1 | + | 99497 | 0.68 | 0.482818 |
Target: 5'- aCCGGGGGgacggGGCCccggagcgagggagcGGGCUGCCCGg -3' miRNA: 3'- gGGUCCCCag---CCGGa--------------CUCGAUGGGUg -5' |
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6112 | 3' | -61.3 | NC_001826.1 | + | 99297 | 0.68 | 0.482818 |
Target: 5'- aCCGGGGGgacggGGCCccggagcgagggagcGGGCUGCCCGg -3' miRNA: 3'- gGGUCCCCag---CCGGa--------------CUCGAUGGGUg -5' |
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6112 | 3' | -61.3 | NC_001826.1 | + | 99197 | 0.68 | 0.482818 |
Target: 5'- aCCGGGGGgacggGGCCccggagcgagggagcGGGCUGCCCGg -3' miRNA: 3'- gGGUCCCCag---CCGGa--------------CUCGAUGGGUg -5' |
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6112 | 3' | -61.3 | NC_001826.1 | + | 99097 | 0.68 | 0.482818 |
Target: 5'- aCCGGGGGgacggGGCCccggagcgagggagcGGGCUGCCCGg -3' miRNA: 3'- gGGUCCCCag---CCGGa--------------CUCGAUGGGUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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