miRNA display CGI


Results 1 - 20 of 79 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6112 3' -61.3 NC_001826.1 + 100895 0.68 0.482818
Target:  5'- aCCGGGGGgacggGGCCccggagcgagggagcGGGCUGCCCGg -3'
miRNA:   3'- gGGUCCCCag---CCGGa--------------CUCGAUGGGUg -5'
6112 3' -61.3 NC_001826.1 + 99996 0.68 0.482818
Target:  5'- aCCGGGGGgacggGGCCccggagcgagggagcGGGCUGCCCGg -3'
miRNA:   3'- gGGUCCCCag---CCGGa--------------CUCGAUGGGUg -5'
6112 3' -61.3 NC_001826.1 + 100096 0.68 0.482818
Target:  5'- aCCGGGGGgacggGGCCccggagcgagggagcGGGCUGCCCGg -3'
miRNA:   3'- gGGUCCCCag---CCGGa--------------CUCGAUGGGUg -5'
6112 3' -61.3 NC_001826.1 + 100196 0.68 0.482818
Target:  5'- aCCGGGGGgacggGGCCccggagcgagggagcGGGCUGCCCGg -3'
miRNA:   3'- gGGUCCCCag---CCGGa--------------CUCGAUGGGUg -5'
6112 3' -61.3 NC_001826.1 + 100296 0.68 0.482818
Target:  5'- aCCGGGGGgacggGGCCccggagcgagggagcGGGCUGCCCGg -3'
miRNA:   3'- gGGUCCCCag---CCGGa--------------CUCGAUGGGUg -5'
6112 3' -61.3 NC_001826.1 + 100396 0.68 0.482818
Target:  5'- aCCGGGGGgacggGGCCccggagcgagggagcGGGCUGCCCGg -3'
miRNA:   3'- gGGUCCCCag---CCGGa--------------CUCGAUGGGUg -5'
6112 3' -61.3 NC_001826.1 + 100496 0.68 0.482818
Target:  5'- aCCGGGGGgacggGGCCccggagcgagggagcGGGCUGCCCGg -3'
miRNA:   3'- gGGUCCCCag---CCGGa--------------CUCGAUGGGUg -5'
6112 3' -61.3 NC_001826.1 + 100596 0.68 0.482818
Target:  5'- aCCGGGGGgacggGGCCccggagcgagggagcGGGCUGCCCGg -3'
miRNA:   3'- gGGUCCCCag---CCGGa--------------CUCGAUGGGUg -5'
6112 3' -61.3 NC_001826.1 + 100696 0.68 0.482818
Target:  5'- aCCGGGGGgacggGGCCccggagcgagggagcGGGCUGCCCGg -3'
miRNA:   3'- gGGUCCCCag---CCGGa--------------CUCGAUGGGUg -5'
6112 3' -61.3 NC_001826.1 + 99896 0.68 0.482818
Target:  5'- aCCGGGGGgacggGGCCccggagcgagggagcGGGCUGCCCGg -3'
miRNA:   3'- gGGUCCCCag---CCGGa--------------CUCGAUGGGUg -5'
6112 3' -61.3 NC_001826.1 + 99697 0.68 0.482818
Target:  5'- aCCGGGGGgacggGGCCccggagcgagggagcGGGCUGCCCGg -3'
miRNA:   3'- gGGUCCCCag---CCGGa--------------CUCGAUGGGUg -5'
6112 3' -61.3 NC_001826.1 + 99597 0.68 0.482818
Target:  5'- aCCGGGGGgacggGGCCccggagcgagggagcGGGCUGCCCGg -3'
miRNA:   3'- gGGUCCCCag---CCGGa--------------CUCGAUGGGUg -5'
6112 3' -61.3 NC_001826.1 + 101037 0.7 0.393783
Target:  5'- gCCC-GGGGUgcggguccccCGGCCUGGGgaGCCaaaGCg -3'
miRNA:   3'- -GGGuCCCCA----------GCCGGACUCgaUGGg--UG- -5'
6112 3' -61.3 NC_001826.1 + 98897 0.68 0.482818
Target:  5'- aCCGGGGGgacggGGCCccggagcgagggagcGGGCUGCCCGg -3'
miRNA:   3'- gGGUCCCCag---CCGGa--------------CUCGAUGGGUg -5'
6112 3' -61.3 NC_001826.1 + 98997 0.68 0.482818
Target:  5'- aCCGGGGGgacggGGCCccggagcgagggagcGGGCUGCCCGg -3'
miRNA:   3'- gGGUCCCCag---CCGGa--------------CUCGAUGGGUg -5'
6112 3' -61.3 NC_001826.1 + 99097 0.68 0.482818
Target:  5'- aCCGGGGGgacggGGCCccggagcgagggagcGGGCUGCCCGg -3'
miRNA:   3'- gGGUCCCCag---CCGGa--------------CUCGAUGGGUg -5'
6112 3' -61.3 NC_001826.1 + 99197 0.68 0.482818
Target:  5'- aCCGGGGGgacggGGCCccggagcgagggagcGGGCUGCCCGg -3'
miRNA:   3'- gGGUCCCCag---CCGGa--------------CUCGAUGGGUg -5'
6112 3' -61.3 NC_001826.1 + 99297 0.68 0.482818
Target:  5'- aCCGGGGGgacggGGCCccggagcgagggagcGGGCUGCCCGg -3'
miRNA:   3'- gGGUCCCCag---CCGGa--------------CUCGAUGGGUg -5'
6112 3' -61.3 NC_001826.1 + 99397 0.68 0.482818
Target:  5'- aCCGGGGGgacggGGCCccggagcgagggagcGGGCUGCCCGg -3'
miRNA:   3'- gGGUCCCCag---CCGGa--------------CUCGAUGGGUg -5'
6112 3' -61.3 NC_001826.1 + 99497 0.68 0.482818
Target:  5'- aCCGGGGGgacggGGCCccggagcgagggagcGGGCUGCCCGg -3'
miRNA:   3'- gGGUCCCCag---CCGGa--------------CUCGAUGGGUg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.