miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6124 3' -59 NC_001826.1 + 118722 0.66 0.696067
Target:  5'- cGAGCCCcUCU-UCCCcCCuggggggucgAGCCCCCc -3'
miRNA:   3'- -CUUGGGcAGAuAGGGuGG----------UCGGGGGu -5'
6124 3' -59 NC_001826.1 + 93564 0.66 0.696067
Target:  5'- -uACUCGUCggGggUCGCCAGCUCCCGu -3'
miRNA:   3'- cuUGGGCAGa-UagGGUGGUCGGGGGU- -5'
6124 3' -59 NC_001826.1 + 99037 0.66 0.685963
Target:  5'- cGGCCCGgggugCggGUCCCccggccuggggaGCCGGUCCCCc -3'
miRNA:   3'- cUUGGGCa----Ga-UAGGG------------UGGUCGGGGGu -5'
6124 3' -59 NC_001826.1 + 99237 0.66 0.685963
Target:  5'- cGGCCCGgggugCggGUCCCccggccuggggaGCCGGUCCCCc -3'
miRNA:   3'- cUUGGGCa----Ga-UAGGG------------UGGUCGGGGGu -5'
6124 3' -59 NC_001826.1 + 99437 0.66 0.685963
Target:  5'- cGGCCCGgggugCggGUCCCccggccuggggaGCCGGUCCCCc -3'
miRNA:   3'- cUUGGGCa----Ga-UAGGG------------UGGUCGGGGGu -5'
6124 3' -59 NC_001826.1 + 100036 0.66 0.685963
Target:  5'- cGGCCCGgggugCggGUCCCccggccuggggaGCCGGUCCCCc -3'
miRNA:   3'- cUUGGGCa----Ga-UAGGG------------UGGUCGGGGGu -5'
6124 3' -59 NC_001826.1 + 100136 0.66 0.685963
Target:  5'- cGGCCCGgggugCggGUCCCccggccuggggaGCCGGUCCCCc -3'
miRNA:   3'- cUUGGGCa----Ga-UAGGG------------UGGUCGGGGGu -5'
6124 3' -59 NC_001826.1 + 100336 0.66 0.685963
Target:  5'- cGGCCCGgggugCggGUCCCccggccuggggaGCCGGUCCCCc -3'
miRNA:   3'- cUUGGGCa----Ga-UAGGG------------UGGUCGGGGGu -5'
6124 3' -59 NC_001826.1 + 100436 0.66 0.685963
Target:  5'- cGGCCCGgggugCggGUCCCccggccuggggaGCCGGUCCCCc -3'
miRNA:   3'- cUUGGGCa----Ga-UAGGG------------UGGUCGGGGGu -5'
6124 3' -59 NC_001826.1 + 81339 0.66 0.685963
Target:  5'- aGACCUGUCacucugccCCCGCCuGGCCCUCu -3'
miRNA:   3'- cUUGGGCAGaua-----GGGUGG-UCGGGGGu -5'
6124 3' -59 NC_001826.1 + 100636 0.66 0.685963
Target:  5'- cGGCCCGgggugCggGUCCCccggccuggggaGCCGGUCCCCc -3'
miRNA:   3'- cUUGGGCa----Ga-UAGGG------------UGGUCGGGGGu -5'
6124 3' -59 NC_001826.1 + 99137 0.66 0.685963
Target:  5'- cGGCCCGgggugCggGUCCCccggccuggggaGCCGGUCCCCc -3'
miRNA:   3'- cUUGGGCa----Ga-UAGGG------------UGGUCGGGGGu -5'
6124 3' -59 NC_001826.1 + 99637 0.66 0.685963
Target:  5'- cGGCCCGgggugCggGUCCCccggccuggggaGCCGGUCCCCc -3'
miRNA:   3'- cUUGGGCa----Ga-UAGGG------------UGGUCGGGGGu -5'
6124 3' -59 NC_001826.1 + 99836 0.66 0.685963
Target:  5'- cGGCCCGgggugCggGUCCCccggccuggggaGCCGGUCCCCc -3'
miRNA:   3'- cUUGGGCa----Ga-UAGGG------------UGGUCGGGGGu -5'
6124 3' -59 NC_001826.1 + 100536 0.66 0.685963
Target:  5'- cGGCCCGgggugCggGUCCCccggccuggggaGCCGGUCCCCc -3'
miRNA:   3'- cUUGGGCa----Ga-UAGGG------------UGGUCGGGGGu -5'
6124 3' -59 NC_001826.1 + 10447 0.66 0.685963
Target:  5'- gGGACCCGg--GUggacaccaUCCACCAGUCCCUu -3'
miRNA:   3'- -CUUGGGCagaUA--------GGGUGGUCGGGGGu -5'
6124 3' -59 NC_001826.1 + 98937 0.66 0.685963
Target:  5'- cGGCCCGgggugCggGUCCCccggccuggggaGCCGGUCCCCc -3'
miRNA:   3'- cUUGGGCa----Ga-UAGGG------------UGGUCGGGGGu -5'
6124 3' -59 NC_001826.1 + 99337 0.66 0.685963
Target:  5'- cGGCCCGgggugCggGUCCCccggccuggggaGCCGGUCCCCc -3'
miRNA:   3'- cUUGGGCa----Ga-UAGGG------------UGGUCGGGGGu -5'
6124 3' -59 NC_001826.1 + 99737 0.66 0.685963
Target:  5'- cGGCCCGgggugCggGUCCCccggccuggggaGCCGGUCCCCc -3'
miRNA:   3'- cUUGGGCa----Ga-UAGGG------------UGGUCGGGGGu -5'
6124 3' -59 NC_001826.1 + 100236 0.66 0.685963
Target:  5'- cGGCCCGgggugCggGUCCCccggccuggggaGCCGGUCCCCc -3'
miRNA:   3'- cUUGGGCa----Ga-UAGGG------------UGGUCGGGGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.