miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6130 5' -49 NC_001826.1 + 28171 0.66 0.9958
Target:  5'- --cGGGAAGGUcgGGGGaaccggGGGGAu -3'
miRNA:   3'- aguCCUUUUUAuaCCCCguca--UCCCU- -5'
6130 5' -49 NC_001826.1 + 28038 0.66 0.9958
Target:  5'- --cGGGAAGGUcgGGGGaaccggGGGGAu -3'
miRNA:   3'- aguCCUUUUUAuaCCCCguca--UCCCU- -5'
6130 5' -49 NC_001826.1 + 6618 0.66 0.99328
Target:  5'- cCAGGuaaag-GUGGaGG-AGUAGGGAa -3'
miRNA:   3'- aGUCCuuuuuaUACC-CCgUCAUCCCU- -5'
6130 5' -49 NC_001826.1 + 10258 0.67 0.992212
Target:  5'- gCAGGAuaauAAUaaaGUGGGcuGgAGUGGGGAa -3'
miRNA:   3'- aGUCCUuu--UUA---UACCC--CgUCAUCCCU- -5'
6130 5' -49 NC_001826.1 + 119011 0.67 0.989673
Target:  5'- cCGGGG-----GUGGGG-GGUAGGGGc -3'
miRNA:   3'- aGUCCUuuuuaUACCCCgUCAUCCCU- -5'
6130 5' -49 NC_001826.1 + 118580 0.67 0.98653
Target:  5'- gCAGGggGGA---GGGGCacGGUcagcGGGGAc -3'
miRNA:   3'- aGUCCuuUUUauaCCCCG--UCA----UCCCU- -5'
6130 5' -49 NC_001826.1 + 35289 0.68 0.984706
Target:  5'- gCGGGAGAAGacacuGGUGGUGGGGAa -3'
miRNA:   3'- aGUCCUUUUUauaccCCGUCAUCCCU- -5'
6130 5' -49 NC_001826.1 + 70094 0.68 0.982488
Target:  5'- cCGGGGu---UGUGGGGguGUcugguucgggaguAGGGGg -3'
miRNA:   3'- aGUCCUuuuuAUACCCCguCA-------------UCCCU- -5'
6130 5' -49 NC_001826.1 + 47870 0.68 0.9805
Target:  5'- gUCAGGGAAucacccauGUGUGGGGCAGc----- -3'
miRNA:   3'- -AGUCCUUUu-------UAUACCCCGUCaucccu -5'
6130 5' -49 NC_001826.1 + 118792 0.68 0.9805
Target:  5'- gCGGGGGAGGcuUGUGGGGgcccCGGgcccGGGGAg -3'
miRNA:   3'- aGUCCUUUUU--AUACCCC----GUCa---UCCCU- -5'
6130 5' -49 NC_001826.1 + 72593 0.68 0.9805
Target:  5'- cUAGGGAGGGgcgGGGGUuugggucaAGUGGGGu -3'
miRNA:   3'- aGUCCUUUUUauaCCCCG--------UCAUCCCu -5'
6130 5' -49 NC_001826.1 + 118317 0.68 0.975487
Target:  5'- cCAGGG-----GUGGGG-GGUAGGGGc -3'
miRNA:   3'- aGUCCUuuuuaUACCCCgUCAUCCCU- -5'
6130 5' -49 NC_001826.1 + 118475 0.68 0.974661
Target:  5'- cUCGGGGAAcugc-GGGGCAGccugacucuggcucUGGGGGa -3'
miRNA:   3'- -AGUCCUUUuuauaCCCCGUC--------------AUCCCU- -5'
6130 5' -49 NC_001826.1 + 108179 0.69 0.972654
Target:  5'- aCAGGu------UGGGGCAGUAcacuguGGGAc -3'
miRNA:   3'- aGUCCuuuuuauACCCCGUCAU------CCCU- -5'
6130 5' -49 NC_001826.1 + 115373 0.69 0.969592
Target:  5'- cCAGGGcuuuuGAAGUcUGGGGUGGguuUAGGGGc -3'
miRNA:   3'- aGUCCU-----UUUUAuACCCCGUC---AUCCCU- -5'
6130 5' -49 NC_001826.1 + 118546 0.69 0.969592
Target:  5'- cCGGGggGcg---GGGGUgucuAGUAGGGGg -3'
miRNA:   3'- aGUCCuuUuuauaCCCCG----UCAUCCCU- -5'
6130 5' -49 NC_001826.1 + 4567 0.69 0.966293
Target:  5'- aUUGGGAAucuuuccuUGUGGGGguGUuGGGGc -3'
miRNA:   3'- -AGUCCUUuuu-----AUACCCCguCAuCCCU- -5'
6130 5' -49 NC_001826.1 + 27000 0.69 0.962749
Target:  5'- cUCGGGAGGGGgccGGGGaGGUcGGGGAu -3'
miRNA:   3'- -AGUCCUUUUUauaCCCCgUCA-UCCCU- -5'
6130 5' -49 NC_001826.1 + 26960 0.69 0.962749
Target:  5'- cUCGGGAGGGGgccGGGGaGGUcGGGGAu -3'
miRNA:   3'- -AGUCCUUUUUauaCCCCgUCA-UCCCU- -5'
6130 5' -49 NC_001826.1 + 26920 0.69 0.962749
Target:  5'- cUCGGGAGGGGgccGGGGaGGUcGGGGAu -3'
miRNA:   3'- -AGUCCUUUUUauaCCCCgUCA-UCCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.