miRNA display CGI


Results 1 - 20 of 46 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6137 3' -56.4 NC_001826.1 + 20622 0.66 0.872437
Target:  5'- uUCAA-GGAGG--GGCCCaCAGGGCGGg -3'
miRNA:   3'- -GGUUgCCUCCgaCUGGG-GUUUCGCCg -5'
6137 3' -56.4 NC_001826.1 + 51715 0.66 0.864975
Target:  5'- ----aGGAGGCUGcCUCCAucAGUGaGCa -3'
miRNA:   3'- gguugCCUCCGACuGGGGUu-UCGC-CG- -5'
6137 3' -56.4 NC_001826.1 + 73274 0.66 0.864217
Target:  5'- -aGAUGGAgaucaGGCUGGguaugcCCCCGGggguguuGGCGGCc -3'
miRNA:   3'- ggUUGCCU-----CCGACU------GGGGUU-------UCGCCG- -5'
6137 3' -56.4 NC_001826.1 + 106367 0.66 0.841337
Target:  5'- uCCAagagcGCGGAGGCauuaGGCUCUAGAGCcccauGCu -3'
miRNA:   3'- -GGU-----UGCCUCCGa---CUGGGGUUUCGc----CG- -5'
6137 3' -56.4 NC_001826.1 + 6091 0.67 0.81597
Target:  5'- uCCAACaucaaGCUGACCCCAAccaGGUuaGGCa -3'
miRNA:   3'- -GGUUGccuc-CGACUGGGGUU---UCG--CCG- -5'
6137 3' -56.4 NC_001826.1 + 97194 0.67 0.815097
Target:  5'- aCCugauCGGGGGUggUGugCCUGAAGCauugccuGGCa -3'
miRNA:   3'- -GGuu--GCCUCCG--ACugGGGUUUCG-------CCG- -5'
6137 3' -56.4 NC_001826.1 + 45209 0.67 0.7982
Target:  5'- aCAAgUGGAuGCUGACCCUcccuuauGGUGGCc -3'
miRNA:   3'- gGUU-GCCUcCGACUGGGGuu-----UCGCCG- -5'
6137 3' -56.4 NC_001826.1 + 1943 0.68 0.770426
Target:  5'- -gGugGGAGGCUaGAUggUCguGGGCGGCc -3'
miRNA:   3'- ggUugCCUCCGA-CUG--GGguUUCGCCG- -5'
6137 3' -56.4 NC_001826.1 + 2558 0.68 0.770426
Target:  5'- aCCAugGccAGGUUGGCCC---AGUGGCg -3'
miRNA:   3'- -GGUugCc-UCCGACUGGGguuUCGCCG- -5'
6137 3' -56.4 NC_001826.1 + 99896 0.68 0.760907
Target:  5'- aCCG--GGGGGacggGGCCCCGGAGCGa- -3'
miRNA:   3'- -GGUugCCUCCga--CUGGGGUUUCGCcg -5'
6137 3' -56.4 NC_001826.1 + 99297 0.68 0.760907
Target:  5'- aCCG--GGGGGacggGGCCCCGGAGCGa- -3'
miRNA:   3'- -GGUugCCUCCga--CUGGGGUUUCGCcg -5'
6137 3' -56.4 NC_001826.1 + 99197 0.68 0.760907
Target:  5'- aCCG--GGGGGacggGGCCCCGGAGCGa- -3'
miRNA:   3'- -GGUugCCUCCga--CUGGGGUUUCGCcg -5'
6137 3' -56.4 NC_001826.1 + 99097 0.68 0.760907
Target:  5'- aCCG--GGGGGacggGGCCCCGGAGCGa- -3'
miRNA:   3'- -GGUugCCUCCga--CUGGGGUUUCGCcg -5'
6137 3' -56.4 NC_001826.1 + 98997 0.68 0.760907
Target:  5'- aCCG--GGGGGacggGGCCCCGGAGCGa- -3'
miRNA:   3'- -GGUugCCUCCga--CUGGGGUUUCGCcg -5'
6137 3' -56.4 NC_001826.1 + 98897 0.68 0.760907
Target:  5'- aCCG--GGGGGacggGGCCCCGGAGCGa- -3'
miRNA:   3'- -GGUugCCUCCga--CUGGGGUUUCGCcg -5'
6137 3' -56.4 NC_001826.1 + 100696 0.68 0.760907
Target:  5'- aCCG--GGGGGacggGGCCCCGGAGCGa- -3'
miRNA:   3'- -GGUugCCUCCga--CUGGGGUUUCGCcg -5'
6137 3' -56.4 NC_001826.1 + 100496 0.68 0.760907
Target:  5'- aCCG--GGGGGacggGGCCCCGGAGCGa- -3'
miRNA:   3'- -GGUugCCUCCga--CUGGGGUUUCGCcg -5'
6137 3' -56.4 NC_001826.1 + 100296 0.68 0.760907
Target:  5'- aCCG--GGGGGacggGGCCCCGGAGCGa- -3'
miRNA:   3'- -GGUugCCUCCga--CUGGGGUUUCGCcg -5'
6137 3' -56.4 NC_001826.1 + 100196 0.68 0.760907
Target:  5'- aCCG--GGGGGacggGGCCCCGGAGCGa- -3'
miRNA:   3'- -GGUugCCUCCga--CUGGGGUUUCGCcg -5'
6137 3' -56.4 NC_001826.1 + 99996 0.68 0.760907
Target:  5'- aCCG--GGGGGacggGGCCCCGGAGCGa- -3'
miRNA:   3'- -GGUugCCUCCga--CUGGGGUUUCGCcg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.