miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6147 5' -58.6 NC_001826.1 + 32488 0.66 0.730333
Target:  5'- cAGAGUCCCucaGCUGGuu--GCUaCCCUc -3'
miRNA:   3'- -UCUCGGGGua-CGACCuuguCGA-GGGA- -5'
6147 5' -58.6 NC_001826.1 + 118904 0.66 0.720311
Target:  5'- -cAGCCCCcgGCaggGGGgcGCGGCgggCCCc -3'
miRNA:   3'- ucUCGGGGuaCGa--CCU--UGUCGa--GGGa -5'
6147 5' -58.6 NC_001826.1 + 98610 0.66 0.717289
Target:  5'- aGGAGCCCgG-GCUGGGucaggcuguuucugACAGCgUCCa- -3'
miRNA:   3'- -UCUCGGGgUaCGACCU--------------UGUCG-AGGga -5'
6147 5' -58.6 NC_001826.1 + 85149 0.66 0.710212
Target:  5'- cGGGCCCUGUccuugGCUGGcAGCAGaCUUUCUa -3'
miRNA:   3'- uCUCGGGGUA-----CGACC-UUGUC-GAGGGA- -5'
6147 5' -58.6 NC_001826.1 + 118996 0.66 0.709198
Target:  5'- uGGGGCgCCAUGCgcccgcgccUGGGgcgccacGCGGCgcgCCCUg -3'
miRNA:   3'- -UCUCGgGGUACG---------ACCU-------UGUCGa--GGGA- -5'
6147 5' -58.6 NC_001826.1 + 26890 0.66 0.700044
Target:  5'- cGGGCCCCA-GCUcgGGAGgGGaaCCCa -3'
miRNA:   3'- uCUCGGGGUaCGA--CCUUgUCgaGGGa -5'
6147 5' -58.6 NC_001826.1 + 114717 0.66 0.689818
Target:  5'- aGGAGCaCUUuUGgUGGAG-AGCUCCCUg -3'
miRNA:   3'- -UCUCG-GGGuACgACCUUgUCGAGGGA- -5'
6147 5' -58.6 NC_001826.1 + 67970 0.66 0.689818
Target:  5'- --uGCCCCAUGUUcGGGgguACAGCUaCCUc -3'
miRNA:   3'- ucuCGGGGUACGA-CCU---UGUCGAgGGA- -5'
6147 5' -58.6 NC_001826.1 + 7632 0.67 0.668192
Target:  5'- --cGCCCCAUGCuuccguaUGGAACcuuGCUCUa- -3'
miRNA:   3'- ucuCGGGGUACG-------ACCUUGu--CGAGGga -5'
6147 5' -58.6 NC_001826.1 + 99534 0.67 0.658879
Target:  5'- cGGGGCCCCguccccccgGUuccccccaucccGCcggggGGGACGGCUCCCc -3'
miRNA:   3'- -UCUCGGGG---------UA------------CGa----CCUUGUCGAGGGa -5'
6147 5' -58.6 NC_001826.1 + 4487 0.67 0.658879
Target:  5'- cAGGGCUC---GCUGGGACGGUaguUCCCg -3'
miRNA:   3'- -UCUCGGGguaCGACCUUGUCG---AGGGa -5'
6147 5' -58.6 NC_001826.1 + 28092 0.67 0.627739
Target:  5'- -cGGCCCCcucccgaGCUGGGGCccGGUUCCCc -3'
miRNA:   3'- ucUCGGGGua-----CGACCUUG--UCGAGGGa -5'
6147 5' -58.6 NC_001826.1 + 28133 0.67 0.627739
Target:  5'- -cGGCCCCcucccgaGCUGGGGCccGGUUCCCc -3'
miRNA:   3'- ucUCGGGGua-----CGACCUUG--UCGAGGGa -5'
6147 5' -58.6 NC_001826.1 + 47394 0.7 0.448116
Target:  5'- ---aCCCCAagauUGCUGGAAguGCUUCCUu -3'
miRNA:   3'- ucucGGGGU----ACGACCUUguCGAGGGA- -5'
6147 5' -58.6 NC_001826.1 + 100206 0.72 0.3453
Target:  5'- cGGGGCCCCGgaGCgagGGAGCGgGCUgCCCg -3'
miRNA:   3'- -UCUCGGGGUa-CGa--CCUUGU-CGA-GGGa -5'
6147 5' -58.6 NC_001826.1 + 100106 0.72 0.3453
Target:  5'- cGGGGCCCCGgaGCgagGGAGCGgGCUgCCCg -3'
miRNA:   3'- -UCUCGGGGUa-CGa--CCUUGU-CGA-GGGa -5'
6147 5' -58.6 NC_001826.1 + 99307 0.72 0.3453
Target:  5'- cGGGGCCCCGgaGCgagGGAGCGgGCUgCCCg -3'
miRNA:   3'- -UCUCGGGGUa-CGa--CCUUGU-CGA-GGGa -5'
6147 5' -58.6 NC_001826.1 + 100006 0.72 0.3453
Target:  5'- cGGGGCCCCGgaGCgagGGAGCGgGCUgCCCg -3'
miRNA:   3'- -UCUCGGGGUa-CGa--CCUUGU-CGA-GGGa -5'
6147 5' -58.6 NC_001826.1 + 99906 0.72 0.3453
Target:  5'- cGGGGCCCCGgaGCgagGGAGCGgGCUgCCCg -3'
miRNA:   3'- -UCUCGGGGUa-CGa--CCUUGU-CGA-GGGa -5'
6147 5' -58.6 NC_001826.1 + 99407 0.72 0.3453
Target:  5'- cGGGGCCCCGgaGCgagGGAGCGgGCUgCCCg -3'
miRNA:   3'- -UCUCGGGGUa-CGa--CCUUGU-CGA-GGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.