miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
621 3' -62.4 AC_000017.1 + 23620 0.66 0.282605
Target:  5'- cCGCGCcacugGGUcgucuucauucaGCCGC-CGCACCguGCg -3'
miRNA:   3'- -GCGCGa----CCA------------CGGCGcGUGUGGguCGg -5'
621 3' -62.4 AC_000017.1 + 33259 0.66 0.281903
Target:  5'- gGCGgUGGUGCUGCagcaGCGCGCgaauaaacugcugCC-GCCg -3'
miRNA:   3'- gCGCgACCACGGCG----CGUGUG-------------GGuCGG- -5'
621 3' -62.4 AC_000017.1 + 9374 0.66 0.275648
Target:  5'- aGCGCgaGGUG-CGCGaCACugUC-GCCg -3'
miRNA:   3'- gCGCGa-CCACgGCGC-GUGugGGuCGG- -5'
621 3' -62.4 AC_000017.1 + 12491 0.66 0.275648
Target:  5'- aGCGgUGGUcccGgCGCGCGCAaacCCCAcGCa -3'
miRNA:   3'- gCGCgACCA---CgGCGCGUGU---GGGU-CGg -5'
621 3' -62.4 AC_000017.1 + 24060 0.66 0.275648
Target:  5'- aGCGCggacgcGGUGCgGCGCgACGUCCA-CCa -3'
miRNA:   3'- gCGCGa-----CCACGgCGCG-UGUGGGUcGG- -5'
621 3' -62.4 AC_000017.1 + 12547 0.66 0.268828
Target:  5'- aCGCGCUG--GCCGaaaacaggGC-CAUCCGGCCc -3'
miRNA:   3'- -GCGCGACcaCGGCg-------CGuGUGGGUCGG- -5'
621 3' -62.4 AC_000017.1 + 11463 0.66 0.268828
Target:  5'- aCGCGCggaccGGgauuagucccGCgCGCGCACACguggCGGCCg -3'
miRNA:   3'- -GCGCGa----CCa---------CG-GCGCGUGUGg---GUCGG- -5'
621 3' -62.4 AC_000017.1 + 25454 0.66 0.268828
Target:  5'- uGCGCUccuccaGGcacUGCUGCcaCACGCCCAugGCCg -3'
miRNA:   3'- gCGCGA------CC---ACGGCGc-GUGUGGGU--CGG- -5'
621 3' -62.4 AC_000017.1 + 26817 0.66 0.262146
Target:  5'- cCGCuGCUGuUGCUGC-CGCugCC-GCCg -3'
miRNA:   3'- -GCG-CGACcACGGCGcGUGugGGuCGG- -5'
621 3' -62.4 AC_000017.1 + 18541 0.66 0.262146
Target:  5'- -aCGCUGGaccUGCCucccccCGCugACACCCAGCa -3'
miRNA:   3'- gcGCGACC---ACGGc-----GCG--UGUGGGUCGg -5'
621 3' -62.4 AC_000017.1 + 17865 0.66 0.262146
Target:  5'- gGCGaUUGGcGCCGUGCccggaauuGCAUCCguGGCCu -3'
miRNA:   3'- gCGC-GACCaCGGCGCG--------UGUGGG--UCGG- -5'
621 3' -62.4 AC_000017.1 + 10882 0.66 0.255599
Target:  5'- -cCGCUuacGCCGCGCGCGgCCAGUg -3'
miRNA:   3'- gcGCGAccaCGGCGCGUGUgGGUCGg -5'
621 3' -62.4 AC_000017.1 + 16922 0.66 0.255599
Target:  5'- -aUGCUGGcguUGCCGCuggacgaggGCaacccaACACCUAGCCu -3'
miRNA:   3'- gcGCGACC---ACGGCG---------CG------UGUGGGUCGG- -5'
621 3' -62.4 AC_000017.1 + 25483 0.66 0.249186
Target:  5'- aGCGCUccGUGgC-CGCGCACCUGGCg -3'
miRNA:   3'- gCGCGAc-CACgGcGCGUGUGGGUCGg -5'
621 3' -62.4 AC_000017.1 + 17592 0.66 0.246659
Target:  5'- uCGCGaaggaggcaggaccCUGGUGCUgccaacaGCGCGCuaccacCCCAGCa -3'
miRNA:   3'- -GCGC--------------GACCACGG-------CGCGUGu-----GGGUCGg -5'
621 3' -62.4 AC_000017.1 + 12482 0.67 0.236761
Target:  5'- aCGCGUcaGG-GuuGCGCGCAgUCAGCg -3'
miRNA:   3'- -GCGCGa-CCaCggCGCGUGUgGGUCGg -5'
621 3' -62.4 AC_000017.1 + 11303 0.67 0.236761
Target:  5'- gGCGCUccuaGCCGCGcCAgGCCCucGCCc -3'
miRNA:   3'- gCGCGAcca-CGGCGC-GUgUGGGu-CGG- -5'
621 3' -62.4 AC_000017.1 + 12561 0.67 0.2191
Target:  5'- uCGUGCguggGGU-UUGCGCGCGCCgGGaCCa -3'
miRNA:   3'- -GCGCGa---CCAcGGCGCGUGUGGgUC-GG- -5'
621 3' -62.4 AC_000017.1 + 12729 0.67 0.207961
Target:  5'- uGCGCcacGGccUCGCGCACAUcccccaCCAGCCg -3'
miRNA:   3'- gCGCGa--CCacGGCGCGUGUG------GGUCGG- -5'
621 3' -62.4 AC_000017.1 + 22670 0.68 0.192171
Target:  5'- aCGCGUUGGUGaUgGUGCGCAgCCuGUg -3'
miRNA:   3'- -GCGCGACCAC-GgCGCGUGUgGGuCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.