miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6248 3' -49.8 NC_001844.1 + 23453 0.66 0.996772
Target:  5'- aAC-AGGAACUCAcuucAGAGCCAGCcuGCUUg -3'
miRNA:   3'- gUGaUCUUUGGGU----UUUCGGUCG--UGGG- -5'
6248 3' -49.8 NC_001844.1 + 120269 0.66 0.996772
Target:  5'- cCGCcgGGAAGCCU---GGCgGGCACgCg -3'
miRNA:   3'- -GUGa-UCUUUGGGuuuUCGgUCGUGgG- -5'
6248 3' -49.8 NC_001844.1 + 141430 0.66 0.996772
Target:  5'- gGgUGGGAGCgCCGguuGAAGCCgcaaaAGCGCCg -3'
miRNA:   3'- gUgAUCUUUG-GGU---UUUCGG-----UCGUGGg -5'
6248 3' -49.8 NC_001844.1 + 112229 0.66 0.99619
Target:  5'- aCACUAu--ACCCAGAacauugguauAGCaCAGUACCa -3'
miRNA:   3'- -GUGAUcuuUGGGUUU----------UCG-GUCGUGGg -5'
6248 3' -49.8 NC_001844.1 + 58796 0.66 0.99619
Target:  5'- gGCgcaGAACUC-GAGGCCGGC-CCCa -3'
miRNA:   3'- gUGaucUUUGGGuUUUCGGUCGuGGG- -5'
6248 3' -49.8 NC_001844.1 + 115267 0.66 0.99619
Target:  5'- aCGCggaGGGAGCCCGGgcccGGGCCucGGCcuggaccaucACCCa -3'
miRNA:   3'- -GUGa--UCUUUGGGUU----UUCGG--UCG----------UGGG- -5'
6248 3' -49.8 NC_001844.1 + 59581 0.66 0.996127
Target:  5'- aGCUGGccacguuuUCCAaugcugcGAGGCCAGC-CCCa -3'
miRNA:   3'- gUGAUCuuu-----GGGU-------UUUCGGUCGuGGG- -5'
6248 3' -49.8 NC_001844.1 + 114664 0.66 0.995524
Target:  5'- gUACUAGGc-CCCucGAGCUuuGGgGCCCa -3'
miRNA:   3'- -GUGAUCUuuGGGuuUUCGG--UCgUGGG- -5'
6248 3' -49.8 NC_001844.1 + 96620 0.66 0.995524
Target:  5'- gCGCUAGggGCUauaucuGCUAGCGCg- -3'
miRNA:   3'- -GUGAUCuuUGGguuuu-CGGUCGUGgg -5'
6248 3' -49.8 NC_001844.1 + 110873 0.66 0.995524
Target:  5'- cCACUGGugGCCC---GGCCAGacaagaaaAUCCg -3'
miRNA:   3'- -GUGAUCuuUGGGuuuUCGGUCg-------UGGG- -5'
6248 3' -49.8 NC_001844.1 + 93484 0.66 0.995524
Target:  5'- gACUcGGAACCuCAAgcGaCCAGUACUCu -3'
miRNA:   3'- gUGAuCUUUGG-GUUuuC-GGUCGUGGG- -5'
6248 3' -49.8 NC_001844.1 + 31415 0.66 0.994766
Target:  5'- ---gGGGAACCgaGGGAGCCGacGCACCa -3'
miRNA:   3'- gugaUCUUUGGg-UUUUCGGU--CGUGGg -5'
6248 3' -49.8 NC_001844.1 + 53828 0.66 0.994766
Target:  5'- -uUUAGcAACCCAAAAGCaugaacaCACCCu -3'
miRNA:   3'- guGAUCuUUGGGUUUUCGguc----GUGGG- -5'
6248 3' -49.8 NC_001844.1 + 110992 0.66 0.994685
Target:  5'- uCGCccAGAAAacCCCAGAcccgugcacccaaGGCCuaacGCACCCa -3'
miRNA:   3'- -GUGa-UCUUU--GGGUUU-------------UCGGu---CGUGGG- -5'
6248 3' -49.8 NC_001844.1 + 138422 0.66 0.993908
Target:  5'- gACUAGuguAUaUAuuAGCCAGCGCCUc -3'
miRNA:   3'- gUGAUCuu-UGgGUuuUCGGUCGUGGG- -5'
6248 3' -49.8 NC_001844.1 + 4354 0.66 0.993816
Target:  5'- gGCUGGAAcCCUAGAGGCUAuagacuuGCACa- -3'
miRNA:   3'- gUGAUCUUuGGGUUUUCGGU-------CGUGgg -5'
6248 3' -49.8 NC_001844.1 + 85495 0.67 0.992939
Target:  5'- gCAUUGGAAACUguGcuauAAGCgCAGCACgCg -3'
miRNA:   3'- -GUGAUCUUUGGguU----UUCG-GUCGUGgG- -5'
6248 3' -49.8 NC_001844.1 + 96160 0.67 0.992939
Target:  5'- aACUuuGAAAUCgGuuAGAGUCAGCGCUCa -3'
miRNA:   3'- gUGAu-CUUUGGgU--UUUCGGUCGUGGG- -5'
6248 3' -49.8 NC_001844.1 + 55591 0.67 0.992939
Target:  5'- -gUUGGggGCCUuAGAGCUuGC-CCCa -3'
miRNA:   3'- guGAUCuuUGGGuUUUCGGuCGuGGG- -5'
6248 3' -49.8 NC_001844.1 + 143670 0.67 0.990245
Target:  5'- gGCcGGAGGCCCGuugcagcgggcugcGAugguAGCCAGgGCCUg -3'
miRNA:   3'- gUGaUCUUUGGGU--------------UU----UCGGUCgUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.