miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
633 3' -57.6 AC_000017.1 + 8622 0.66 0.425912
Target:  5'- gGGgGGCucgggacccgccGGGAGaGGGGGCAGgGGCAc -3'
miRNA:   3'- gUCgCCG------------UUCUCgUUCUCGUCgCCGU- -5'
633 3' -57.6 AC_000017.1 + 23713 0.66 0.425912
Target:  5'- aCGGCaagggaGGUAAGcGCAcGGuGCGGCGGCu -3'
miRNA:   3'- -GUCG------CCGUUCuCGU-UCuCGUCGCCGu -5'
633 3' -57.6 AC_000017.1 + 24659 0.66 0.425912
Target:  5'- gAGCGGaCAAGcAGCu--GGCcuuGCGGCAg -3'
miRNA:   3'- gUCGCC-GUUC-UCGuucUCGu--CGCCGU- -5'
633 3' -57.6 AC_000017.1 + 24204 0.66 0.416087
Target:  5'- uGGCGGCAucGGuGgAGGcGGUGGUGGCGa -3'
miRNA:   3'- gUCGCCGU--UCuCgUUC-UCGUCGCCGU- -5'
633 3' -57.6 AC_000017.1 + 15201 0.66 0.396861
Target:  5'- aAGCGcGCuGAGGcCGAG-GCAGCGGCc -3'
miRNA:   3'- gUCGC-CG-UUCUcGUUCuCGUCGCCGu -5'
633 3' -57.6 AC_000017.1 + 14202 0.66 0.396861
Target:  5'- -cGUGGUGAGcgcGGCGccAGuGGCGGCGGCGc -3'
miRNA:   3'- guCGCCGUUC---UCGU--UC-UCGUCGCCGU- -5'
633 3' -57.6 AC_000017.1 + 4618 0.66 0.396861
Target:  5'- --aUGGCAAuGGGCccacGGGCGGCGGCc -3'
miRNA:   3'- gucGCCGUU-CUCGuu--CUCGUCGCCGu -5'
633 3' -57.6 AC_000017.1 + 30514 0.67 0.378216
Target:  5'- gCAGCGucuGCuacaGAGGcGCAA-AGCAGCGGCAg -3'
miRNA:   3'- -GUCGC---CG----UUCU-CGUUcUCGUCGCCGU- -5'
633 3' -57.6 AC_000017.1 + 18077 0.67 0.369117
Target:  5'- --uCGGCAccAGCAAuauGAGCGGUGGCGc -3'
miRNA:   3'- gucGCCGUucUCGUU---CUCGUCGCCGU- -5'
633 3' -57.6 AC_000017.1 + 26243 0.67 0.360169
Target:  5'- -cGCGGCugcugcugauAGGGCu---GCGGCGGCGg -3'
miRNA:   3'- guCGCCGu---------UCUCGuucuCGUCGCCGU- -5'
633 3' -57.6 AC_000017.1 + 22112 0.67 0.360169
Target:  5'- aCAGCGGUcGGGGgAAGAgGCAaUGGCGc -3'
miRNA:   3'- -GUCGCCGuUCUCgUUCU-CGUcGCCGU- -5'
633 3' -57.6 AC_000017.1 + 3867 0.68 0.317732
Target:  5'- gCGGUGGCugcAGCGGcugaAGCGGCGGCGg -3'
miRNA:   3'- -GUCGCCGuucUCGUUc---UCGUCGCCGU- -5'
633 3' -57.6 AC_000017.1 + 29310 0.68 0.3129
Target:  5'- aGGuuGUAAGcuguuuugcaaugcaAGCAAGaAGCGGCGGCAg -3'
miRNA:   3'- gUCgcCGUUC---------------UCGUUC-UCGUCGCCGU- -5'
633 3' -57.6 AC_000017.1 + 34324 0.68 0.30971
Target:  5'- -uGCGGUgguGGAuGUuaucAGGGCAGCGGCGc -3'
miRNA:   3'- guCGCCGu--UCU-CGu---UCUCGUCGCCGU- -5'
633 3' -57.6 AC_000017.1 + 15657 0.68 0.301843
Target:  5'- uGGCGGau-GAGCuGGGAGUAGaCGGCc -3'
miRNA:   3'- gUCGCCguuCUCG-UUCUCGUC-GCCGu -5'
633 3' -57.6 AC_000017.1 + 18663 0.68 0.294131
Target:  5'- -cGCGGCuAGGGCGGGuuacaacaacGGCGGaCGGCc -3'
miRNA:   3'- guCGCCGuUCUCGUUC----------UCGUC-GCCGu -5'
633 3' -57.6 AC_000017.1 + 26842 0.69 0.26482
Target:  5'- gCGGCGGCAGcAGCAGGAGgAGgagcgcugcgucUGGCGc -3'
miRNA:   3'- -GUCGCCGUUcUCGUUCUCgUC------------GCCGU- -5'
633 3' -57.6 AC_000017.1 + 12083 0.69 0.251074
Target:  5'- gGGCccuGGCu--GGCAcGGGCAGCGGCGa -3'
miRNA:   3'- gUCG---CCGuucUCGUuCUCGUCGCCGU- -5'
633 3' -57.6 AC_000017.1 + 27498 0.69 0.247066
Target:  5'- aCAGUGGUggGAGCgggAcuuuccugguacaccAGGGCAGCGGg- -3'
miRNA:   3'- -GUCGCCGuuCUCG---U---------------UCUCGUCGCCgu -5'
633 3' -57.6 AC_000017.1 + 23925 0.7 0.231564
Target:  5'- uCAGCcGCuuuuuuGGGGGCGcgcggGGGGCGGCGGCGa -3'
miRNA:   3'- -GUCGcCG------UUCUCGU-----UCUCGUCGCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.