Results 1 - 20 of 273 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
6345 | 5' | -58.2 | NC_001847.1 | + | 2147 | 0.65 | 0.798304 |
Target: 5'- -gGUUUGcgcugcgcagcaccAGGUcucgcaGCGCCCGCGcCGCCuggGCg -3' miRNA: 3'- uaCAAAC--------------UCCA------CGCGGGCGU-GCGG---CG- -5' |
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6345 | 5' | -58.2 | NC_001847.1 | + | 105880 | 0.65 | 0.798304 |
Target: 5'- ------cGGGUGCGCCgccagcgcguccggCGCGCagGCCGCg -3' miRNA: 3'- uacaaacUCCACGCGG--------------GCGUG--CGGCG- -5' |
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6345 | 5' | -58.2 | NC_001847.1 | + | 3067 | 0.65 | 0.798304 |
Target: 5'- ------cGGGUGCGCCgccagcgcguccggCGCGCagGCCGCg -3' miRNA: 3'- uacaaacUCCACGCGG--------------GCGUG--CGGCG- -5' |
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6345 | 5' | -58.2 | NC_001847.1 | + | 41186 | 0.65 | 0.797403 |
Target: 5'- cGUGUUaaGAGG-GCGCCCagaaaagGCGCaguaucgcgagaauGCCGCa -3' miRNA: 3'- -UACAAa-CUCCaCGCGGG-------CGUG--------------CGGCG- -5' |
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6345 | 5' | -58.2 | NC_001847.1 | + | 13345 | 0.66 | 0.791968 |
Target: 5'- -----cGAGcagGCGCCCGCGaggacgcuccaGCCGCg -3' miRNA: 3'- uacaaaCUCca-CGCGGGCGUg----------CGGCG- -5' |
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6345 | 5' | -58.2 | NC_001847.1 | + | 33859 | 0.66 | 0.791968 |
Target: 5'- -----aGAGGacUGCGCgCGCuucuugcaggagGCGCCGCc -3' miRNA: 3'- uacaaaCUCC--ACGCGgGCG------------UGCGGCG- -5' |
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6345 | 5' | -58.2 | NC_001847.1 | + | 12838 | 0.66 | 0.791968 |
Target: 5'- uUGg--GAGaUG-GCCgGUACGCCGCa -3' miRNA: 3'- uACaaaCUCcACgCGGgCGUGCGGCG- -5' |
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6345 | 5' | -58.2 | NC_001847.1 | + | 49555 | 0.66 | 0.791968 |
Target: 5'- --cUUUGccGGcGCGCCCGUcgacgGCGCCGUu -3' miRNA: 3'- uacAAACu-CCaCGCGGGCG-----UGCGGCG- -5' |
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6345 | 5' | -58.2 | NC_001847.1 | + | 49998 | 0.66 | 0.791968 |
Target: 5'- -----aGAGGa--GCCCGCGCGCC-Ca -3' miRNA: 3'- uacaaaCUCCacgCGGGCGUGCGGcG- -5' |
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6345 | 5' | -58.2 | NC_001847.1 | + | 35454 | 0.66 | 0.791968 |
Target: 5'- -----cGGcGGccCGCgCCGCGCGCCGCa -3' miRNA: 3'- uacaaaCU-CCacGCG-GGCGUGCGGCG- -5' |
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6345 | 5' | -58.2 | NC_001847.1 | + | 53693 | 0.66 | 0.791968 |
Target: 5'- -----aGAuGUGCGCgCGCgagcGCGCCGCc -3' miRNA: 3'- uacaaaCUcCACGCGgGCG----UGCGGCG- -5' |
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6345 | 5' | -58.2 | NC_001847.1 | + | 120445 | 0.66 | 0.791968 |
Target: 5'- -cGUUcGucAGcUGCGCCUGCuccauCGCCGCg -3' miRNA: 3'- uaCAAaC--UCcACGCGGGCGu----GCGGCG- -5' |
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6345 | 5' | -58.2 | NC_001847.1 | + | 61825 | 0.66 | 0.791968 |
Target: 5'- ----aUGAGGUcgucgGCGUCCGacuCGCCGUc -3' miRNA: 3'- uacaaACUCCA-----CGCGGGCgu-GCGGCG- -5' |
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6345 | 5' | -58.2 | NC_001847.1 | + | 62359 | 0.66 | 0.791968 |
Target: 5'- -----cGGGGUGCaGcCCCGUGCGCaGCu -3' miRNA: 3'- uacaaaCUCCACG-C-GGGCGUGCGgCG- -5' |
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6345 | 5' | -58.2 | NC_001847.1 | + | 88362 | 0.66 | 0.791968 |
Target: 5'- -----cGAGGgGCGCgCGgGCGCgGCg -3' miRNA: 3'- uacaaaCUCCaCGCGgGCgUGCGgCG- -5' |
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6345 | 5' | -58.2 | NC_001847.1 | + | 44931 | 0.66 | 0.791058 |
Target: 5'- cGUGUcgcuGGG-GCGCUCgggcugggcgacgGCGCGCCGCa -3' miRNA: 3'- -UACAaac-UCCaCGCGGG-------------CGUGCGGCG- -5' |
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6345 | 5' | -58.2 | NC_001847.1 | + | 102228 | 0.66 | 0.790146 |
Target: 5'- -cGUcgGGcGGgacggcguccagGCGCUCGCGCGCgGCg -3' miRNA: 3'- uaCAaaCU-CCa-----------CGCGGGCGUGCGgCG- -5' |
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6345 | 5' | -58.2 | NC_001847.1 | + | 55914 | 0.66 | 0.782796 |
Target: 5'- -----cGGGGagcGCGCCCGUgauccgcggccgGCGUCGCg -3' miRNA: 3'- uacaaaCUCCa--CGCGGGCG------------UGCGGCG- -5' |
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6345 | 5' | -58.2 | NC_001847.1 | + | 80552 | 0.66 | 0.782796 |
Target: 5'- ------cGGGcGCGCgCCGCcaGCGCCGCc -3' miRNA: 3'- uacaaacUCCaCGCG-GGCG--UGCGGCG- -5' |
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6345 | 5' | -58.2 | NC_001847.1 | + | 90684 | 0.66 | 0.782796 |
Target: 5'- ------cAGGUagcugucucgcGCGCgugCCGCGCGCCGCg -3' miRNA: 3'- uacaaacUCCA-----------CGCG---GGCGUGCGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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