miRNA display CGI


Results 1 - 20 of 521 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6346 3' -60.6 NC_001847.1 + 134757 0.71 0.414018
Target:  5'- gGUCGgagCGCgGUCcggCGCGcGGCGCGCg -3'
miRNA:   3'- gCAGUg--GCGgCAGaa-GCGC-CCGCGCG- -5'
6346 3' -60.6 NC_001847.1 + 133596 0.7 0.475226
Target:  5'- -cUCGCgGCgCGUCUUCGgccCGGGCGCcuucGCg -3'
miRNA:   3'- gcAGUGgCG-GCAGAAGC---GCCCGCG----CG- -5'
6346 3' -60.6 NC_001847.1 + 133546 0.67 0.673746
Target:  5'- aGUgCGCCGCgCG-CUggcccgagcggcgCGCuGGCGCGCg -3'
miRNA:   3'- gCA-GUGGCG-GCaGAa------------GCGcCCGCGCG- -5'
6346 3' -60.6 NC_001847.1 + 133312 0.66 0.706819
Target:  5'- gCGU-GCCGCUGUUggaggugacUGUGGGCGaCGCg -3'
miRNA:   3'- -GCAgUGGCGGCAGaa-------GCGCCCGC-GCG- -5'
6346 3' -60.6 NC_001847.1 + 133223 0.67 0.638335
Target:  5'- aGUgGCCGCCGcgCcgCgGCGGGCucucgcacGCGCu -3'
miRNA:   3'- gCAgUGGCGGCa-GaaG-CGCCCG--------CGCG- -5'
6346 3' -60.6 NC_001847.1 + 133165 0.71 0.422466
Target:  5'- -uUCugCGCUG-CUaccugCGCGGGCGCGg -3'
miRNA:   3'- gcAGugGCGGCaGAa----GCGCCCGCGCg -5'
6346 3' -60.6 NC_001847.1 + 133048 0.68 0.569593
Target:  5'- gCGgccCGCCGCCGcgCgggcccCGCGGG-GCGCu -3'
miRNA:   3'- -GCa--GUGGCGGCa-Gaa----GCGCCCgCGCG- -5'
6346 3' -60.6 NC_001847.1 + 132967 0.73 0.31422
Target:  5'- --aCGCCGCCcaggCggCGCGGGCGCuGCg -3'
miRNA:   3'- gcaGUGGCGGca--GaaGCGCCCGCG-CG- -5'
6346 3' -60.6 NC_001847.1 + 132841 0.67 0.647206
Target:  5'- uGUCGCCaugggcaGCCGUCUUgGacuuuGGCGCGg -3'
miRNA:   3'- gCAGUGG-------CGGCAGAAgCgc---CCGCGCg -5'
6346 3' -60.6 NC_001847.1 + 132780 0.68 0.608764
Target:  5'- aGcCGCCGCCGcCgaCGCggccGGGCcgGCGCg -3'
miRNA:   3'- gCaGUGGCGGCaGaaGCG----CCCG--CGCG- -5'
6346 3' -60.6 NC_001847.1 + 132763 1.11 0.000792
Target:  5'- gCGUCACCGCCGUCUUCGCGGGCGCGCg -3'
miRNA:   3'- -GCAGUGGCGGCAGAAGCGCCCGCGCG- -5'
6346 3' -60.6 NC_001847.1 + 132370 0.68 0.589121
Target:  5'- gGagGCCGCCGg---CGgGGGCGCcgGCg -3'
miRNA:   3'- gCagUGGCGGCagaaGCgCCCGCG--CG- -5'
6346 3' -60.6 NC_001847.1 + 132278 0.67 0.648192
Target:  5'- gCGgC-CCGCgCGUCggccugggCGCuGGCGCGCg -3'
miRNA:   3'- -GCaGuGGCG-GCAGaa------GCGcCCGCGCG- -5'
6346 3' -60.6 NC_001847.1 + 131959 0.69 0.559887
Target:  5'- cCG-CugCGCCGUCgccugcCGCGaGGCGCu- -3'
miRNA:   3'- -GCaGugGCGGCAGaa----GCGC-CCGCGcg -5'
6346 3' -60.6 NC_001847.1 + 131904 0.71 0.405675
Target:  5'- ---uGCCGCCGgcgagcaCggCGCGGGCgGCGCg -3'
miRNA:   3'- gcagUGGCGGCa------GaaGCGCCCG-CGCG- -5'
6346 3' -60.6 NC_001847.1 + 131340 0.7 0.506543
Target:  5'- gCGcCGCCGCCGcccggccgcgugcgCUUCgGCGGcGCGgGCg -3'
miRNA:   3'- -GCaGUGGCGGCa-------------GAAG-CGCC-CGCgCG- -5'
6346 3' -60.6 NC_001847.1 + 131293 0.69 0.540622
Target:  5'- --cCGgCGCCGUCUaCGUcugGGGCgGCGCg -3'
miRNA:   3'- gcaGUgGCGGCAGAaGCG---CCCG-CGCG- -5'
6346 3' -60.6 NC_001847.1 + 131214 0.76 0.222997
Target:  5'- --cCGCCGCgG-CgccagCGCGGGCGCGCa -3'
miRNA:   3'- gcaGUGGCGgCaGaa---GCGCCCGCGCG- -5'
6346 3' -60.6 NC_001847.1 + 131099 0.72 0.357906
Target:  5'- -uUCACCGUgGaUCUcUCG-GGGCGCGCg -3'
miRNA:   3'- gcAGUGGCGgC-AGA-AGCgCCCGCGCG- -5'
6346 3' -60.6 NC_001847.1 + 130837 0.67 0.667862
Target:  5'- cCGUCauaGCCGCCGccaUCgaagccgaggCGgGGGCgGCGCc -3'
miRNA:   3'- -GCAG---UGGCGGC---AGaa--------GCgCCCG-CGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.