Results 1 - 20 of 60 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6347 | 3' | -55.4 | NC_001847.1 | + | 130260 | 0.69 | 0.753616 |
Target: 5'- uGCGACGACaaaaUGGGCUUCcgcgUGGCUg -3' miRNA: 3'- uCGCUGCUGa---ACUCGGAGaa--GCCGAg -5' |
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6347 | 3' | -55.4 | NC_001847.1 | + | 104542 | 0.67 | 0.860254 |
Target: 5'- cGCGGCGGCcccgGGGCCgCUacgCGGCg- -3' miRNA: 3'- uCGCUGCUGaa--CUCGGaGAa--GCCGag -5' |
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6347 | 3' | -55.4 | NC_001847.1 | + | 96388 | 0.67 | 0.852359 |
Target: 5'- cGGCGGCGGCaauggcgGGGCCggCggCGGCa- -3' miRNA: 3'- -UCGCUGCUGaa-----CUCGGa-GaaGCCGag -5' |
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6347 | 3' | -55.4 | NC_001847.1 | + | 96304 | 0.67 | 0.852359 |
Target: 5'- cGGCGGCGGCaauggcgGGGCCggCggCGGCa- -3' miRNA: 3'- -UCGCUGCUGaa-----CUCGGa-GaaGCCGag -5' |
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6347 | 3' | -55.4 | NC_001847.1 | + | 129454 | 0.67 | 0.835955 |
Target: 5'- aAGCGGCuACUUGAGCUgg--CGGC-Cg -3' miRNA: 3'- -UCGCUGcUGAACUCGGagaaGCCGaG- -5' |
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6347 | 3' | -55.4 | NC_001847.1 | + | 19007 | 0.68 | 0.80993 |
Target: 5'- gGGCGGCGcCcucGGCCUCUUCGcGCg- -3' miRNA: 3'- -UCGCUGCuGaacUCGGAGAAGC-CGag -5' |
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6347 | 3' | -55.4 | NC_001847.1 | + | 114647 | 0.68 | 0.79173 |
Target: 5'- cGCGACGACgcgcGAGCCgUCUUC--CUCg -3' miRNA: 3'- uCGCUGCUGaa--CUCGG-AGAAGccGAG- -5' |
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6347 | 3' | -55.4 | NC_001847.1 | + | 34082 | 0.69 | 0.763335 |
Target: 5'- cGCGGCGGCcccgGGGCCggCcUCGGCg- -3' miRNA: 3'- uCGCUGCUGaa--CUCGGa-GaAGCCGag -5' |
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6347 | 3' | -55.4 | NC_001847.1 | + | 75738 | 0.69 | 0.753616 |
Target: 5'- cAGCGAUGACcgccGcGCCUCcgcCGGCUCc -3' miRNA: 3'- -UCGCUGCUGaa--CuCGGAGaa-GCCGAG- -5' |
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6347 | 3' | -55.4 | NC_001847.1 | + | 92486 | 0.67 | 0.867178 |
Target: 5'- cGCGGCGGC---GGCCUCUUCgacaaagGGCa- -3' miRNA: 3'- uCGCUGCUGaacUCGGAGAAG-------CCGag -5' |
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6347 | 3' | -55.4 | NC_001847.1 | + | 102315 | 0.67 | 0.867936 |
Target: 5'- cGGCGGCcACgcGGGCCUCg-CGcGCUCg -3' miRNA: 3'- -UCGCUGcUGaaCUCGGAGaaGC-CGAG- -5' |
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6347 | 3' | -55.4 | NC_001847.1 | + | 80746 | 0.66 | 0.875398 |
Target: 5'- cGCGGCGGCgcccGCCUCgcccgCGGC-Cg -3' miRNA: 3'- uCGCUGCUGaacuCGGAGaa---GCCGaG- -5' |
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6347 | 3' | -55.4 | NC_001847.1 | + | 56898 | 0.66 | 0.909235 |
Target: 5'- cGCGGCGACgucGGCCUCcagGGCg- -3' miRNA: 3'- uCGCUGCUGaacUCGGAGaagCCGag -5' |
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6347 | 3' | -55.4 | NC_001847.1 | + | 13237 | 0.66 | 0.909235 |
Target: 5'- cGCGAUGGCcagcgGGGCCacgCgggCGGUUCg -3' miRNA: 3'- uCGCUGCUGaa---CUCGGa--Gaa-GCCGAG- -5' |
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6347 | 3' | -55.4 | NC_001847.1 | + | 2377 | 0.66 | 0.902945 |
Target: 5'- cGGCGGCGGCUUuucGCCggcgCcUCGGCcCa -3' miRNA: 3'- -UCGCUGCUGAAcu-CGGa---GaAGCCGaG- -5' |
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6347 | 3' | -55.4 | NC_001847.1 | + | 45426 | 0.66 | 0.902945 |
Target: 5'- gAGCGAaGGCUUGAGCCcagggCgcccgucgCGGCg- -3' miRNA: 3'- -UCGCUgCUGAACUCGGa----Gaa------GCCGag -5' |
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6347 | 3' | -55.4 | NC_001847.1 | + | 13712 | 0.66 | 0.902945 |
Target: 5'- cGGCGGCGGuc-GGGCCgCUcaaCGGCUCc -3' miRNA: 3'- -UCGCUGCUgaaCUCGGaGAa--GCCGAG- -5' |
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6347 | 3' | -55.4 | NC_001847.1 | + | 5186 | 0.66 | 0.902945 |
Target: 5'- cGCGGCG-CggGAGaagcCCUCgcCGGCUCu -3' miRNA: 3'- uCGCUGCuGaaCUC----GGAGaaGCCGAG- -5' |
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6347 | 3' | -55.4 | NC_001847.1 | + | 16609 | 0.66 | 0.896412 |
Target: 5'- cGGCGAUcaGACgcUGAGCa---UCGGCUCg -3' miRNA: 3'- -UCGCUG--CUGa-ACUCGgagaAGCCGAG- -5' |
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6347 | 3' | -55.4 | NC_001847.1 | + | 107646 | 0.66 | 0.882635 |
Target: 5'- cGGCGGCGGCcgaGGCCUCUgccgccgaagcCGGCg- -3' miRNA: 3'- -UCGCUGCUGaacUCGGAGAa----------GCCGag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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