miRNA display CGI


Results 21 - 40 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6347 5' -58.3 NC_001847.1 + 125485 0.72 0.44316
Target:  5'- cGGcGGGCG-CGAGGaCGCCCggcUGCUCGa -3'
miRNA:   3'- -UCuUCUGCuGCUCC-GCGGGa--GCGAGC- -5'
6347 5' -58.3 NC_001847.1 + 104956 0.72 0.461239
Target:  5'- cGAAGGCGAgCGccGGGCGCCaggGCUCGg -3'
miRNA:   3'- uCUUCUGCU-GC--UCCGCGGgagCGAGC- -5'
6347 5' -58.3 NC_001847.1 + 118661 0.72 0.4797
Target:  5'- cGGGAGGCGcaagaGAGGUGUCCgCGCUCu -3'
miRNA:   3'- -UCUUCUGCug---CUCCGCGGGaGCGAGc -5'
6347 5' -58.3 NC_001847.1 + 35199 0.72 0.470423
Target:  5'- gAGGAGcgcgcGCGGCuGGGCGCCCUgCGCgCGg -3'
miRNA:   3'- -UCUUC-----UGCUGcUCCGCGGGA-GCGaGC- -5'
6347 5' -58.3 NC_001847.1 + 54711 0.72 0.4797
Target:  5'- gGGAGGACGACGcgcGGGUcCCCUUcCUCGa -3'
miRNA:   3'- -UCUUCUGCUGC---UCCGcGGGAGcGAGC- -5'
6347 5' -58.3 NC_001847.1 + 36703 0.71 0.508045
Target:  5'- cGgcGugGugGAGGCGgCUUCGgUCGc -3'
miRNA:   3'- uCuuCugCugCUCCGCgGGAGCgAGC- -5'
6347 5' -58.3 NC_001847.1 + 58835 0.71 0.508045
Target:  5'- -uAGGugGACGAcGGUGCCCgcggCGCUgCGu -3'
miRNA:   3'- ucUUCugCUGCU-CCGCGGGa---GCGA-GC- -5'
6347 5' -58.3 NC_001847.1 + 118123 0.71 0.508045
Target:  5'- cGAGGGCGGCGAGGCcGUCUgcgaggcgCGCUgCGu -3'
miRNA:   3'- uCUUCUGCUGCUCCG-CGGGa-------GCGA-GC- -5'
6347 5' -58.3 NC_001847.1 + 95788 0.71 0.517652
Target:  5'- cGGggGGCGGCGcGGGCGCauuaCUggUGCUUGg -3'
miRNA:   3'- -UCuuCUGCUGC-UCCGCGg---GA--GCGAGC- -5'
6347 5' -58.3 NC_001847.1 + 101908 0.71 0.517652
Target:  5'- cGGAGGCGcCGcGGCGCCCggCGCggCGc -3'
miRNA:   3'- uCUUCUGCuGCuCCGCGGGa-GCGa-GC- -5'
6347 5' -58.3 NC_001847.1 + 56188 0.71 0.543933
Target:  5'- uGGAAGAaGugGAGGCGCgCUCGguguacccguacgaCUCGu -3'
miRNA:   3'- -UCUUCUgCugCUCCGCGgGAGC--------------GAGC- -5'
6347 5' -58.3 NC_001847.1 + 95707 0.71 0.52733
Target:  5'- cGGggGGCGGCGcGGGcCGCUCUgGCgCGg -3'
miRNA:   3'- -UCuuCUGCUGC-UCC-GCGGGAgCGaGC- -5'
6347 5' -58.3 NC_001847.1 + 95653 0.71 0.52733
Target:  5'- cGGggGGCGGCGcGGGcCGCUCUgGCgCGg -3'
miRNA:   3'- -UCuuCUGCUGC-UCC-GCGGGAgCGaGC- -5'
6347 5' -58.3 NC_001847.1 + 23723 0.71 0.517652
Target:  5'- cAGAGGuCGAUcAGGCGCUCUUGgUCGu -3'
miRNA:   3'- -UCUUCuGCUGcUCCGCGGGAGCgAGC- -5'
6347 5' -58.3 NC_001847.1 + 70372 0.71 0.508045
Target:  5'- gAGggGGCGcCGGGGCGCgagCUCGCg-- -3'
miRNA:   3'- -UCuuCUGCuGCUCCGCGg--GAGCGagc -5'
6347 5' -58.3 NC_001847.1 + 70701 0.7 0.586612
Target:  5'- cGGgcGGCGGCgGGGGCGCCCgcggcgagCGCg-- -3'
miRNA:   3'- -UCuuCUGCUG-CUCCGCGGGa-------GCGagc -5'
6347 5' -58.3 NC_001847.1 + 29004 0.7 0.556744
Target:  5'- cGGAGGcCGGCGccggcggcagcGGCGCCCgcgccgCGCUCGc -3'
miRNA:   3'- -UCUUCuGCUGCu----------CCGCGGGa-----GCGAGC- -5'
6347 5' -58.3 NC_001847.1 + 49199 0.7 0.556744
Target:  5'- cGggGacggcaacGCGACGGGGCGUCCUgauuggUGCUCc -3'
miRNA:   3'- uCuuC--------UGCUGCUCCGCGGGA------GCGAGc -5'
6347 5' -58.3 NC_001847.1 + 22344 0.7 0.576616
Target:  5'- cGucGAUGGCGAGGCGCag-CGcCUCGg -3'
miRNA:   3'- uCuuCUGCUGCUCCGCGggaGC-GAGC- -5'
6347 5' -58.3 NC_001847.1 + 95734 0.7 0.556744
Target:  5'- nGGggGGCGGCGcGGGcCGCUCUgGCgCGg -3'
miRNA:   3'- -UCuuCUGCUGC-UCC-GCGGGAgCGaGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.