miRNA display CGI


Results 21 - 40 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6347 5' -58.3 NC_001847.1 + 132746 0.66 0.809814
Target:  5'- gGGAGGACGAcucugggcCGAGGCGCCggCGa--- -3'
miRNA:   3'- -UCUUCUGCU--------GCUCCGCGGgaGCgagc -5'
6347 5' -58.3 NC_001847.1 + 55536 0.66 0.809814
Target:  5'- gGGgcGAcCGGCGAcaacgcccccGGCGCCCcCGCcCGa -3'
miRNA:   3'- -UCuuCU-GCUGCU----------CCGCGGGaGCGaGC- -5'
6347 5' -58.3 NC_001847.1 + 33509 0.66 0.809814
Target:  5'- cGGgcGGCGGCG-GGCGCCgC-CGCg-- -3'
miRNA:   3'- -UCuuCUGCUGCuCCGCGG-GaGCGagc -5'
6347 5' -58.3 NC_001847.1 + 110817 0.66 0.809814
Target:  5'- ----cGCGGCGuGGCGCgCCacCGCUCGc -3'
miRNA:   3'- ucuucUGCUGCuCCGCG-GGa-GCGAGC- -5'
6347 5' -58.3 NC_001847.1 + 79756 0.66 0.809814
Target:  5'- cGuAGAUGACGAcGCuGUCCUCGC-CGa -3'
miRNA:   3'- uCuUCUGCUGCUcCG-CGGGAGCGaGC- -5'
6347 5' -58.3 NC_001847.1 + 111178 0.66 0.809814
Target:  5'- cGGAGGGCaGCGAGG-GCUuCUCGCcCGu -3'
miRNA:   3'- -UCUUCUGcUGCUCCgCGG-GAGCGaGC- -5'
6347 5' -58.3 NC_001847.1 + 94494 0.66 0.809814
Target:  5'- cAGAAGGCcGCGAGGCGCgg-CGgaCGu -3'
miRNA:   3'- -UCUUCUGcUGCUCCGCGggaGCgaGC- -5'
6347 5' -58.3 NC_001847.1 + 68793 0.66 0.809814
Target:  5'- cGggGACGAucgccaCGGcGGCGCCCgCGCc-- -3'
miRNA:   3'- uCuuCUGCU------GCU-CCGCGGGaGCGagc -5'
6347 5' -58.3 NC_001847.1 + 85154 0.66 0.809814
Target:  5'- ---cGGCGGCaacacGGCGCCCUCGUggcucUCGu -3'
miRNA:   3'- ucuuCUGCUGcu---CCGCGGGAGCG-----AGC- -5'
6347 5' -58.3 NC_001847.1 + 96856 0.66 0.809814
Target:  5'- cGggGGCGGCGGugggcGGCGgUCCgCGCUgGg -3'
miRNA:   3'- uCuuCUGCUGCU-----CCGC-GGGaGCGAgC- -5'
6347 5' -58.3 NC_001847.1 + 88499 0.66 0.804592
Target:  5'- cGAauGGACGACGGcGGCugcgacgccaaguucGCCCUCGUa-- -3'
miRNA:   3'- uCU--UCUGCUGCU-CCG---------------CGGGAGCGagc -5'
6347 5' -58.3 NC_001847.1 + 44300 0.66 0.801081
Target:  5'- ---cGGCccCGGGGCGCCgCUCGCUg- -3'
miRNA:   3'- ucuuCUGcuGCUCCGCGG-GAGCGAgc -5'
6347 5' -58.3 NC_001847.1 + 85236 0.66 0.801081
Target:  5'- cGAAGGCGGcCGGcGGCGCCaggUGCgCGa -3'
miRNA:   3'- uCUUCUGCU-GCU-CCGCGGga-GCGaGC- -5'
6347 5' -58.3 NC_001847.1 + 98583 0.66 0.801081
Target:  5'- gGGAAGuCcauUGGGGCGCCggCGCUUGg -3'
miRNA:   3'- -UCUUCuGcu-GCUCCGCGGgaGCGAGC- -5'
6347 5' -58.3 NC_001847.1 + 10862 0.66 0.801081
Target:  5'- cGAGGcGCGGCGggcgcGGGCGCCCagGCa-- -3'
miRNA:   3'- uCUUC-UGCUGC-----UCCGCGGGagCGagc -5'
6347 5' -58.3 NC_001847.1 + 578 0.66 0.801081
Target:  5'- uGgcGGCGACGAGGCcGUCUUUGUg-- -3'
miRNA:   3'- uCuuCUGCUGCUCCG-CGGGAGCGagc -5'
6347 5' -58.3 NC_001847.1 + 49246 0.66 0.801081
Target:  5'- ---cGGCGGgGuGGCGCCggcgaacgcgCUCGCUCa -3'
miRNA:   3'- ucuuCUGCUgCuCCGCGG----------GAGCGAGc -5'
6347 5' -58.3 NC_001847.1 + 44045 0.66 0.801081
Target:  5'- cGAGGcgcGCGuCGGGGcCGCCCU-GUUCGu -3'
miRNA:   3'- uCUUC---UGCuGCUCC-GCGGGAgCGAGC- -5'
6347 5' -58.3 NC_001847.1 + 8460 0.66 0.801081
Target:  5'- cGGAGGCGGCGccGgGCCgggggcggCGCUCGg -3'
miRNA:   3'- uCUUCUGCUGCucCgCGGga------GCGAGC- -5'
6347 5' -58.3 NC_001847.1 + 50348 0.66 0.801081
Target:  5'- cGGAGGugGACGAcGGCggcgcgGCCgaCGCUa- -3'
miRNA:   3'- -UCUUCugCUGCU-CCG------CGGgaGCGAgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.