Results 41 - 48 of 48 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio #
|
P value |
| Predicted miRNA align pattern | |||||||
| 6349 | 5' | -56.6 | NC_001847.1 | + | 29364 | 0.66 | 0.85048 |
|
Target: 5'- aCAGcGgCGAC-CGCGCGGCgGCCg- -3' miRNA: 3'- aGUCaCaGCUGaGCGUGCUGgCGGac -5' |
|||||||
| 6349 | 5' | -56.6 | NC_001847.1 | + | 106293 | 0.66 | 0.873233 |
|
Target: 5'- cCGGcGUCG-CgCGCGCGGCCGCg-- -3' miRNA: 3'- aGUCaCAGCuGaGCGUGCUGGCGgac -5' |
|||||||
| 6349 | 5' | -56.6 | NC_001847.1 | + | 27432 | 0.66 | 0.873233 |
|
Target: 5'- gUCGGUGUCG-UUCGCAgCGGCgCGggggcCCUGc -3' miRNA: 3'- -AGUCACAGCuGAGCGU-GCUG-GC-----GGAC- -5' |
|||||||
| 6349 | 5' | -56.6 | NC_001847.1 | + | 57559 | 0.66 | 0.872505 |
|
Target: 5'- -gGGUGccgccgugcgagcUCGGCcCGCGCGGCCGCg-- -3' miRNA: 3'- agUCAC-------------AGCUGaGCGUGCUGGCGgac -5' |
|||||||
| 6349 | 5' | -56.6 | NC_001847.1 | + | 97321 | 0.66 | 0.865856 |
|
Target: 5'- gCAGgcgcGUCGGCgUCGCGCccgcccGGCCGCgUGu -3' miRNA: 3'- aGUCa---CAGCUG-AGCGUG------CUGGCGgAC- -5' |
|||||||
| 6349 | 5' | -56.6 | NC_001847.1 | + | 62135 | 0.66 | 0.85827 |
|
Target: 5'- gUCuGUGagCGGCgugCGCAUGGCCGCg-- -3' miRNA: 3'- -AGuCACa-GCUGa--GCGUGCUGGCGgac -5' |
|||||||
| 6349 | 5' | -56.6 | NC_001847.1 | + | 80539 | 0.66 | 0.887337 |
|
Target: 5'- gUCGGcaUCGGCgcgggCGCGCG-CCGCCa- -3' miRNA: 3'- -AGUCacAGCUGa----GCGUGCuGGCGGac -5' |
|||||||
| 6349 | 5' | -56.6 | NC_001847.1 | + | 96864 | 0.66 | 0.887337 |
|
Target: 5'- gCGGUGggCGGCggucCGCGCuggggaggGACCGCCg- -3' miRNA: 3'- aGUCACa-GCUGa---GCGUG--------CUGGCGGac -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home