miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
635 5' -50.6 AC_000017.1 + 18723 0.66 0.856657
Target:  5'- aGUUGCcACuggcuacgGGCcGCAACGaucGCGGACCg -3'
miRNA:   3'- -CAAUGuUG--------UCGcCGUUGCa--CGUCUGG- -5'
635 5' -50.6 AC_000017.1 + 9490 0.66 0.847603
Target:  5'- --gGCGACGGCgcauggucucGGUGACG-GCGcGGCCg -3'
miRNA:   3'- caaUGUUGUCG----------CCGUUGCaCGU-CUGG- -5'
635 5' -50.6 AC_000017.1 + 30533 0.66 0.818928
Target:  5'- --cGCAaaGCAGCGGCAGa--GCAGgaacGCCu -3'
miRNA:   3'- caaUGU--UGUCGCCGUUgcaCGUC----UGG- -5'
635 5' -50.6 AC_000017.1 + 34917 0.66 0.808904
Target:  5'- --gGCGGggaAGUGGCcgcgcuggucCGUGCAGACCu -3'
miRNA:   3'- caaUGUUg--UCGCCGuu--------GCACGUCUGG- -5'
635 5' -50.6 AC_000017.1 + 16237 0.67 0.7997
Target:  5'- --cGCGGCGGCGGCccugcuuaaccgcgcACGUcGCAccGGCCg -3'
miRNA:   3'- caaUGUUGUCGCCGu--------------UGCA-CGU--CUGG- -5'
635 5' -50.6 AC_000017.1 + 18650 0.67 0.798667
Target:  5'- gGUUACAACAaCGGCgGACGgcccugGCAGcACa -3'
miRNA:   3'- -CAAUGUUGUcGCCG-UUGCa-----CGUC-UGg -5'
635 5' -50.6 AC_000017.1 + 27971 0.67 0.755858
Target:  5'- --gGCGGCAGUGGuCAAgGUGUguuAGGCg -3'
miRNA:   3'- caaUGUUGUCGCC-GUUgCACG---UCUGg -5'
635 5' -50.6 AC_000017.1 + 17758 0.67 0.755858
Target:  5'- --cACGGCcugacgGGCGGCAugcguCGUGCGcACCa -3'
miRNA:   3'- caaUGUUG------UCGCCGUu----GCACGUcUGG- -5'
635 5' -50.6 AC_000017.1 + 28774 0.68 0.744759
Target:  5'- cUUACccUAGCGGCAGucUGCAGugCu -3'
miRNA:   3'- cAAUGuuGUCGCCGUUgcACGUCugG- -5'
635 5' -50.6 AC_000017.1 + 16510 0.68 0.744759
Target:  5'- aGUUGCGcggGgGGCGGguGCGcacgggcacgcGCAGGCCg -3'
miRNA:   3'- -CAAUGU---UgUCGCCguUGCa----------CGUCUGG- -5'
635 5' -50.6 AC_000017.1 + 16402 0.68 0.733528
Target:  5'- -cUGCuGCGGCGGCcgcuCGUcGCcuGGACCu -3'
miRNA:   3'- caAUGuUGUCGCCGuu--GCA-CG--UCUGG- -5'
635 5' -50.6 AC_000017.1 + 16520 0.68 0.722182
Target:  5'- ---cCAGCGGCGGCGGCGcGCAu--- -3'
miRNA:   3'- caauGUUGUCGCCGUUGCaCGUcugg -5'
635 5' -50.6 AC_000017.1 + 6556 0.68 0.722182
Target:  5'- --cGCAAgGGCGGCcGCcucUGCuGGACCa -3'
miRNA:   3'- caaUGUUgUCGCCGuUGc--ACG-UCUGG- -5'
635 5' -50.6 AC_000017.1 + 34964 0.68 0.710733
Target:  5'- uGUUGCAugGGCGGCGAUauaaaaUGCaaGGugCu -3'
miRNA:   3'- -CAAUGUugUCGCCGUUGc-----ACG--UCugG- -5'
635 5' -50.6 AC_000017.1 + 16397 0.68 0.699195
Target:  5'- -----cGCAGgGGCAACGUGUacugGGugCg -3'
miRNA:   3'- caauguUGUCgCCGUUGCACG----UCugG- -5'
635 5' -50.6 AC_000017.1 + 12226 0.68 0.699195
Target:  5'- --gGCAACGuCGGCGGCGUGgAGGa- -3'
miRNA:   3'- caaUGUUGUcGCCGUUGCACgUCUgg -5'
635 5' -50.6 AC_000017.1 + 20560 0.68 0.699195
Target:  5'- --aGCAACauggAGCGGUAGCGU--AGGCCc -3'
miRNA:   3'- caaUGUUG----UCGCCGUUGCAcgUCUGG- -5'
635 5' -50.6 AC_000017.1 + 15293 0.69 0.687582
Target:  5'- -gUGCAgccuccGCAGCGGgGGCG-GCAGcuucgGCCg -3'
miRNA:   3'- caAUGU------UGUCGCCgUUGCaCGUC-----UGG- -5'
635 5' -50.6 AC_000017.1 + 15794 0.69 0.687582
Target:  5'- uGUUGC-GCAGCGGUAGCGUcCcguGAUCu -3'
miRNA:   3'- -CAAUGuUGUCGCCGUUGCAcGu--CUGG- -5'
635 5' -50.6 AC_000017.1 + 11152 0.69 0.687582
Target:  5'- aGggGCAACAuccGCGGCugacGCGgcgGCAGAUg -3'
miRNA:   3'- -CaaUGUUGU---CGCCGu---UGCa--CGUCUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.