miRNA display CGI


Results 1 - 20 of 342 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6350 3' -55.5 NC_001847.1 + 127091 0.65 0.913771
Target:  5'- uGCGCGCGGGCcgcgcggcuuugGGUCcacCGgGCUGUa -3'
miRNA:   3'- -CGUGCGCCUGua----------CUAGu--GCgCGACGa -5'
6350 3' -55.5 NC_001847.1 + 132828 0.66 0.910154
Target:  5'- cGCGCaGCGGGCGUGucgcCAUGgGCaGCc -3'
miRNA:   3'- -CGUG-CGCCUGUACua--GUGCgCGaCGa -5'
6350 3' -55.5 NC_001847.1 + 123732 0.66 0.910154
Target:  5'- aGCG-GCGGcgGCAUcGGcgGCGCGCUGCa -3'
miRNA:   3'- -CGUgCGCC--UGUA-CUagUGCGCGACGa -5'
6350 3' -55.5 NC_001847.1 + 30271 0.66 0.910154
Target:  5'- cGCGcCGCGGcGCAgacGA-CACaaGCGCUGCa -3'
miRNA:   3'- -CGU-GCGCC-UGUa--CUaGUG--CGCGACGa -5'
6350 3' -55.5 NC_001847.1 + 12044 0.66 0.910154
Target:  5'- -aGCGCuGGACGcccu-GCGCGCUGCg -3'
miRNA:   3'- cgUGCG-CCUGUacuagUGCGCGACGa -5'
6350 3' -55.5 NC_001847.1 + 61202 0.66 0.910154
Target:  5'- uGCGCGCGcGcCA-GGUaCGCGCcgGCUGCg -3'
miRNA:   3'- -CGUGCGC-CuGUaCUA-GUGCG--CGACGa -5'
6350 3' -55.5 NC_001847.1 + 133792 0.66 0.910154
Target:  5'- gGCGCaaGGACAUGGcCGCGCaggGCgcgGCg -3'
miRNA:   3'- -CGUGcgCCUGUACUaGUGCG---CGa--CGa -5'
6350 3' -55.5 NC_001847.1 + 30979 0.66 0.910154
Target:  5'- gGCGCaaGGACAUGGcCGCGCaggGCgcgGCg -3'
miRNA:   3'- -CGUGcgCCUGUACUaGUGCG---CGa--CGa -5'
6350 3' -55.5 NC_001847.1 + 116616 0.66 0.910154
Target:  5'- -gGCGCGGACGgcgGcgCGCccgcaGCGCUGg- -3'
miRNA:   3'- cgUGCGCCUGUa--CuaGUG-----CGCGACga -5'
6350 3' -55.5 NC_001847.1 + 101346 0.66 0.910154
Target:  5'- aGCGCGcCGGGCGc---CGCGCGCaGCc -3'
miRNA:   3'- -CGUGC-GCCUGUacuaGUGCGCGaCGa -5'
6350 3' -55.5 NC_001847.1 + 79227 0.66 0.909543
Target:  5'- gGC-CGCGGAuCAcGggCGCGCuccccgaGCUGCUa -3'
miRNA:   3'- -CGuGCGCCU-GUaCuaGUGCG-------CGACGA- -5'
6350 3' -55.5 NC_001847.1 + 88902 0.66 0.909543
Target:  5'- cGC-CGgGGGCGgcucccuUGcgCGCGCGCgGCUc -3'
miRNA:   3'- -CGuGCgCCUGU-------ACuaGUGCGCGaCGA- -5'
6350 3' -55.5 NC_001847.1 + 130101 0.66 0.908313
Target:  5'- cGCgACGCGGGCugggacGAguacgagagcgcccUCGCGCGCgaggGCg -3'
miRNA:   3'- -CG-UGCGCCUGua----CU--------------AGUGCGCGa---CGa -5'
6350 3' -55.5 NC_001847.1 + 116445 0.66 0.903932
Target:  5'- gGCG-GUGGGCGcUGGcgCACGCGCgGCg -3'
miRNA:   3'- -CGUgCGCCUGU-ACUa-GUGCGCGaCGa -5'
6350 3' -55.5 NC_001847.1 + 71888 0.66 0.903932
Target:  5'- uGCgACGCGGugAUG-----GCGCUGCa -3'
miRNA:   3'- -CG-UGCGCCugUACuagugCGCGACGa -5'
6350 3' -55.5 NC_001847.1 + 87332 0.66 0.903932
Target:  5'- uGCAcCGCGGACAaccuggagccGAUCGCGgGC-GCc -3'
miRNA:   3'- -CGU-GCGCCUGUa---------CUAGUGCgCGaCGa -5'
6350 3' -55.5 NC_001847.1 + 86957 0.66 0.903932
Target:  5'- cGCGCGCcccGAgccCGUGuUCACGCccauGCUGCUa -3'
miRNA:   3'- -CGUGCGc--CU---GUACuAGUGCG----CGACGA- -5'
6350 3' -55.5 NC_001847.1 + 21868 0.66 0.903932
Target:  5'- gGUGCGgGGGC-UGcg-GCGCGCUGCc -3'
miRNA:   3'- -CGUGCgCCUGuACuagUGCGCGACGa -5'
6350 3' -55.5 NC_001847.1 + 76294 0.66 0.903932
Target:  5'- gGCGCGCGGACGcag-CGC-CGCggGCa -3'
miRNA:   3'- -CGUGCGCCUGUacuaGUGcGCGa-CGa -5'
6350 3' -55.5 NC_001847.1 + 81887 0.66 0.903932
Target:  5'- cCGCGCGGuCGUGuuucuaaACGCgaGCUGCg -3'
miRNA:   3'- cGUGCGCCuGUACuag----UGCG--CGACGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.