miRNA display CGI


Results 21 - 40 of 342 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6350 3' -55.5 NC_001847.1 + 13841 0.66 0.903296
Target:  5'- uGCGCGaGGGCAcGcUCGCGCGguacagcCUGCUa -3'
miRNA:   3'- -CGUGCgCCUGUaCuAGUGCGC-------GACGA- -5'
6350 3' -55.5 NC_001847.1 + 31028 0.66 0.900083
Target:  5'- cGCGCGCGccggcaacgccggccGACGUcgcGGUCGC-CGCUGUg -3'
miRNA:   3'- -CGUGCGC---------------CUGUA---CUAGUGcGCGACGa -5'
6350 3' -55.5 NC_001847.1 + 60304 0.66 0.897469
Target:  5'- gGCG-GCGGGCGgcaGcgCGCGCGCcaccUGCUc -3'
miRNA:   3'- -CGUgCGCCUGUa--CuaGUGCGCG----ACGA- -5'
6350 3' -55.5 NC_001847.1 + 61275 0.66 0.897469
Target:  5'- cGCGCGCGGGCGc---CGCGcCGCcGCc -3'
miRNA:   3'- -CGUGCGCCUGUacuaGUGC-GCGaCGa -5'
6350 3' -55.5 NC_001847.1 + 17976 0.66 0.897469
Target:  5'- aGCAC-CGGGCGUGcuguccUCugGCGUaGCg -3'
miRNA:   3'- -CGUGcGCCUGUACu-----AGugCGCGaCGa -5'
6350 3' -55.5 NC_001847.1 + 50048 0.66 0.897469
Target:  5'- -gGCGCGGugGcggccgcgGGUcCGCGCGCgGCg -3'
miRNA:   3'- cgUGCGCCugUa-------CUA-GUGCGCGaCGa -5'
6350 3' -55.5 NC_001847.1 + 3712 0.66 0.897469
Target:  5'- -gGCGCGG-CA--AUCGCGCGCgccgGCc -3'
miRNA:   3'- cgUGCGCCuGUacUAGUGCGCGa---CGa -5'
6350 3' -55.5 NC_001847.1 + 50512 0.66 0.897469
Target:  5'- -gGCGCGGGCcagGAguuCGCGCUGg- -3'
miRNA:   3'- cgUGCGCCUGua-CUaguGCGCGACga -5'
6350 3' -55.5 NC_001847.1 + 78410 0.66 0.897469
Target:  5'- cGC-UGCGGGCGcgcugcUGGcgCGCGCGCUGaCg -3'
miRNA:   3'- -CGuGCGCCUGU------ACUa-GUGCGCGAC-Ga -5'
6350 3' -55.5 NC_001847.1 + 116489 0.66 0.897469
Target:  5'- cGCGgGCGGGCAcGG-CGuCGCGCUcGCc -3'
miRNA:   3'- -CGUgCGCCUGUaCUaGU-GCGCGA-CGa -5'
6350 3' -55.5 NC_001847.1 + 105232 0.66 0.897469
Target:  5'- gGCGCGCGGGCAcaggCGgGCGCacuucggGCg -3'
miRNA:   3'- -CGUGCGCCUGUacuaGUgCGCGa------CGa -5'
6350 3' -55.5 NC_001847.1 + 73914 0.66 0.897469
Target:  5'- cGUACGUGGACGacguUCAcCGCGCaGCc -3'
miRNA:   3'- -CGUGCGCCUGUacu-AGU-GCGCGaCGa -5'
6350 3' -55.5 NC_001847.1 + 65501 0.66 0.897469
Target:  5'- -gGCGCGG-UGUGGggcggCGCGCGCagUGCg -3'
miRNA:   3'- cgUGCGCCuGUACUa----GUGCGCG--ACGa -5'
6350 3' -55.5 NC_001847.1 + 84446 0.66 0.897469
Target:  5'- cGCACGCGuGCcgGucGUCGCGCGa-GCa -3'
miRNA:   3'- -CGUGCGCcUGuaC--UAGUGCGCgaCGa -5'
6350 3' -55.5 NC_001847.1 + 86755 0.66 0.897469
Target:  5'- uCGCGCuGGCGUGAcguUCGCGUGCU-Ca -3'
miRNA:   3'- cGUGCGcCUGUACU---AGUGCGCGAcGa -5'
6350 3' -55.5 NC_001847.1 + 28009 0.66 0.897469
Target:  5'- aGCGCGCGG-CGUGccgCGCuuacgaGCGcCUGCa -3'
miRNA:   3'- -CGUGCGCCuGUACua-GUG------CGC-GACGa -5'
6350 3' -55.5 NC_001847.1 + 70649 0.66 0.897469
Target:  5'- gGCugGauGACGUGGcCGCGCauCUGCUg -3'
miRNA:   3'- -CGugCgcCUGUACUaGUGCGc-GACGA- -5'
6350 3' -55.5 NC_001847.1 + 79225 0.66 0.895484
Target:  5'- gGCACGCGGucCGuguacUGGUUuguaauggccgcguACGUGCUGCc -3'
miRNA:   3'- -CGUGCGCCu-GU-----ACUAG--------------UGCGCGACGa -5'
6350 3' -55.5 NC_001847.1 + 76443 0.66 0.89077
Target:  5'- cGCGCGCGGACuuu-UC-CGcCGCgGCa -3'
miRNA:   3'- -CGUGCGCCUGuacuAGuGC-GCGaCGa -5'
6350 3' -55.5 NC_001847.1 + 109951 0.66 0.89077
Target:  5'- cGCGCGCgGGGCucg--CugGCcaGCUGCUa -3'
miRNA:   3'- -CGUGCG-CCUGuacuaGugCG--CGACGA- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.