Results 21 - 40 of 342 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6350 | 3' | -55.5 | NC_001847.1 | + | 13841 | 0.66 | 0.903296 |
Target: 5'- uGCGCGaGGGCAcGcUCGCGCGguacagcCUGCUa -3' miRNA: 3'- -CGUGCgCCUGUaCuAGUGCGC-------GACGA- -5' |
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6350 | 3' | -55.5 | NC_001847.1 | + | 31028 | 0.66 | 0.900083 |
Target: 5'- cGCGCGCGccggcaacgccggccGACGUcgcGGUCGC-CGCUGUg -3' miRNA: 3'- -CGUGCGC---------------CUGUA---CUAGUGcGCGACGa -5' |
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6350 | 3' | -55.5 | NC_001847.1 | + | 60304 | 0.66 | 0.897469 |
Target: 5'- gGCG-GCGGGCGgcaGcgCGCGCGCcaccUGCUc -3' miRNA: 3'- -CGUgCGCCUGUa--CuaGUGCGCG----ACGA- -5' |
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6350 | 3' | -55.5 | NC_001847.1 | + | 61275 | 0.66 | 0.897469 |
Target: 5'- cGCGCGCGGGCGc---CGCGcCGCcGCc -3' miRNA: 3'- -CGUGCGCCUGUacuaGUGC-GCGaCGa -5' |
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6350 | 3' | -55.5 | NC_001847.1 | + | 17976 | 0.66 | 0.897469 |
Target: 5'- aGCAC-CGGGCGUGcuguccUCugGCGUaGCg -3' miRNA: 3'- -CGUGcGCCUGUACu-----AGugCGCGaCGa -5' |
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6350 | 3' | -55.5 | NC_001847.1 | + | 50048 | 0.66 | 0.897469 |
Target: 5'- -gGCGCGGugGcggccgcgGGUcCGCGCGCgGCg -3' miRNA: 3'- cgUGCGCCugUa-------CUA-GUGCGCGaCGa -5' |
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6350 | 3' | -55.5 | NC_001847.1 | + | 3712 | 0.66 | 0.897469 |
Target: 5'- -gGCGCGG-CA--AUCGCGCGCgccgGCc -3' miRNA: 3'- cgUGCGCCuGUacUAGUGCGCGa---CGa -5' |
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6350 | 3' | -55.5 | NC_001847.1 | + | 50512 | 0.66 | 0.897469 |
Target: 5'- -gGCGCGGGCcagGAguuCGCGCUGg- -3' miRNA: 3'- cgUGCGCCUGua-CUaguGCGCGACga -5' |
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6350 | 3' | -55.5 | NC_001847.1 | + | 78410 | 0.66 | 0.897469 |
Target: 5'- cGC-UGCGGGCGcgcugcUGGcgCGCGCGCUGaCg -3' miRNA: 3'- -CGuGCGCCUGU------ACUa-GUGCGCGAC-Ga -5' |
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6350 | 3' | -55.5 | NC_001847.1 | + | 116489 | 0.66 | 0.897469 |
Target: 5'- cGCGgGCGGGCAcGG-CGuCGCGCUcGCc -3' miRNA: 3'- -CGUgCGCCUGUaCUaGU-GCGCGA-CGa -5' |
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6350 | 3' | -55.5 | NC_001847.1 | + | 105232 | 0.66 | 0.897469 |
Target: 5'- gGCGCGCGGGCAcaggCGgGCGCacuucggGCg -3' miRNA: 3'- -CGUGCGCCUGUacuaGUgCGCGa------CGa -5' |
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6350 | 3' | -55.5 | NC_001847.1 | + | 73914 | 0.66 | 0.897469 |
Target: 5'- cGUACGUGGACGacguUCAcCGCGCaGCc -3' miRNA: 3'- -CGUGCGCCUGUacu-AGU-GCGCGaCGa -5' |
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6350 | 3' | -55.5 | NC_001847.1 | + | 65501 | 0.66 | 0.897469 |
Target: 5'- -gGCGCGG-UGUGGggcggCGCGCGCagUGCg -3' miRNA: 3'- cgUGCGCCuGUACUa----GUGCGCG--ACGa -5' |
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6350 | 3' | -55.5 | NC_001847.1 | + | 84446 | 0.66 | 0.897469 |
Target: 5'- cGCACGCGuGCcgGucGUCGCGCGa-GCa -3' miRNA: 3'- -CGUGCGCcUGuaC--UAGUGCGCgaCGa -5' |
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6350 | 3' | -55.5 | NC_001847.1 | + | 86755 | 0.66 | 0.897469 |
Target: 5'- uCGCGCuGGCGUGAcguUCGCGUGCU-Ca -3' miRNA: 3'- cGUGCGcCUGUACU---AGUGCGCGAcGa -5' |
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6350 | 3' | -55.5 | NC_001847.1 | + | 28009 | 0.66 | 0.897469 |
Target: 5'- aGCGCGCGG-CGUGccgCGCuuacgaGCGcCUGCa -3' miRNA: 3'- -CGUGCGCCuGUACua-GUG------CGC-GACGa -5' |
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6350 | 3' | -55.5 | NC_001847.1 | + | 70649 | 0.66 | 0.897469 |
Target: 5'- gGCugGauGACGUGGcCGCGCauCUGCUg -3' miRNA: 3'- -CGugCgcCUGUACUaGUGCGc-GACGA- -5' |
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6350 | 3' | -55.5 | NC_001847.1 | + | 79225 | 0.66 | 0.895484 |
Target: 5'- gGCACGCGGucCGuguacUGGUUuguaauggccgcguACGUGCUGCc -3' miRNA: 3'- -CGUGCGCCu-GU-----ACUAG--------------UGCGCGACGa -5' |
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6350 | 3' | -55.5 | NC_001847.1 | + | 76443 | 0.66 | 0.89077 |
Target: 5'- cGCGCGCGGACuuu-UC-CGcCGCgGCa -3' miRNA: 3'- -CGUGCGCCUGuacuAGuGC-GCGaCGa -5' |
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6350 | 3' | -55.5 | NC_001847.1 | + | 109951 | 0.66 | 0.89077 |
Target: 5'- cGCGCGCgGGGCucg--CugGCcaGCUGCUa -3' miRNA: 3'- -CGUGCG-CCUGuacuaGugCG--CGACGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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