Results 61 - 80 of 879 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6350 | 5' | -62.5 | NC_001847.1 | + | 94221 | 0.76 | 0.161283 |
Target: 5'- cGGAGCucgcGGCggGGCGCC-CGCGCgGcGCCg -3' miRNA: 3'- -CCUCG----UCGa-CCGCGGaGCGUGgC-CGG- -5' |
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6350 | 5' | -62.5 | NC_001847.1 | + | 12972 | 0.76 | 0.161283 |
Target: 5'- uGAGCAGgccaUGGCGCUgcaGUACCGGCUg -3' miRNA: 3'- cCUCGUCg---ACCGCGGag-CGUGGCCGG- -5' |
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6350 | 5' | -62.5 | NC_001847.1 | + | 77462 | 0.76 | 0.146129 |
Target: 5'- cGGGCuggGGCgGGCGCCgggCGC-CCGGCCc -3' miRNA: 3'- cCUCG---UCGaCCGCGGa--GCGuGGCCGG- -5' |
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6350 | 5' | -62.5 | NC_001847.1 | + | 106126 | 0.76 | 0.157367 |
Target: 5'- --cGCGGCgcgGGCGCCgcugccgccgGCGCCGGCCu -3' miRNA: 3'- ccuCGUCGa--CCGCGGag--------CGUGGCCGG- -5' |
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6350 | 5' | -62.5 | NC_001847.1 | + | 116164 | 0.75 | 0.186671 |
Target: 5'- -uGGCGGCcgcgGGCGCCgcggcCGCGCUGGUCg -3' miRNA: 3'- ccUCGUCGa---CCGCGGa----GCGUGGCCGG- -5' |
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6350 | 5' | -62.5 | NC_001847.1 | + | 100622 | 0.75 | 0.177839 |
Target: 5'- cGGGCGGCgcaucgccGGCGCCgucCGCGUCGGCCu -3' miRNA: 3'- cCUCGUCGa-------CCGCGGa--GCGUGGCCGG- -5' |
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6350 | 5' | -62.5 | NC_001847.1 | + | 31115 | 0.75 | 0.186671 |
Target: 5'- cGGGCggcgcgcgcuggAGCUGGCGCCcgacgaGCuGCCGGCCg -3' miRNA: 3'- cCUCG------------UCGACCGCGGag----CG-UGGCCGG- -5' |
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6350 | 5' | -62.5 | NC_001847.1 | + | 53886 | 0.75 | 0.186671 |
Target: 5'- gGGGGCGGCgGGCcccccguCCUCGCGaCGGCCc -3' miRNA: 3'- -CCUCGUCGaCCGc------GGAGCGUgGCCGG- -5' |
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6350 | 5' | -62.5 | NC_001847.1 | + | 74270 | 0.75 | 0.177839 |
Target: 5'- uGGGGCccGC-GcGCGCgCUCGCGCUGGCCu -3' miRNA: 3'- -CCUCGu-CGaC-CGCG-GAGCGUGGCCGG- -5' |
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6350 | 5' | -62.5 | NC_001847.1 | + | 133928 | 0.75 | 0.186671 |
Target: 5'- cGGGCggcgcgcgcuggAGCUGGCGCCcgacgaGCuGCCGGCCg -3' miRNA: 3'- cCUCG------------UCGACCGCGGag----CG-UGGCCGG- -5' |
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6350 | 5' | -62.5 | NC_001847.1 | + | 12041 | 0.75 | 0.186671 |
Target: 5'- cGGAGC-GCUGGaCGCCcugCGCGCUgcggacgccgaGGCCg -3' miRNA: 3'- -CCUCGuCGACC-GCGGa--GCGUGG-----------CCGG- -5' |
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6350 | 5' | -62.5 | NC_001847.1 | + | 99256 | 0.75 | 0.186671 |
Target: 5'- --cGCAGCcGGCGCgggaguauaUUUGCGCCGGCCc -3' miRNA: 3'- ccuCGUCGaCCGCG---------GAGCGUGGCCGG- -5' |
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6350 | 5' | -62.5 | NC_001847.1 | + | 11969 | 0.75 | 0.16938 |
Target: 5'- uGGGCGGCUGaGCGCCgcCGCGCCGucuCCg -3' miRNA: 3'- cCUCGUCGAC-CGCGGa-GCGUGGCc--GG- -5' |
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6350 | 5' | -62.5 | NC_001847.1 | + | 86521 | 0.75 | 0.16938 |
Target: 5'- -cGGCGGCUgGGCGCCcgCGUGCUGGCg -3' miRNA: 3'- ccUCGUCGA-CCGCGGa-GCGUGGCCGg -5' |
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6350 | 5' | -62.5 | NC_001847.1 | + | 13004 | 0.75 | 0.177839 |
Target: 5'- --cGC-GC-GGCGCCcugCGCGCCGGCCg -3' miRNA: 3'- ccuCGuCGaCCGCGGa--GCGUGGCCGG- -5' |
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6350 | 5' | -62.5 | NC_001847.1 | + | 65435 | 0.75 | 0.173563 |
Target: 5'- aGGcGGCAGCcGcGCGCCgcggaccgaGCGCCGGCCc -3' miRNA: 3'- -CC-UCGUCGaC-CGCGGag-------CGUGGCCGG- -5' |
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6350 | 5' | -62.5 | NC_001847.1 | + | 101902 | 0.75 | 0.186671 |
Target: 5'- -cGGCAGCggaGGCGCCgcggCGC-CCGGCg -3' miRNA: 3'- ccUCGUCGa--CCGCGGa---GCGuGGCCGg -5' |
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6350 | 5' | -62.5 | NC_001847.1 | + | 53718 | 0.75 | 0.182207 |
Target: 5'- gGGccGGCGGCUGGCGCUgUGCGCCuGCg -3' miRNA: 3'- -CC--UCGUCGACCGCGGaGCGUGGcCGg -5' |
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6350 | 5' | -62.5 | NC_001847.1 | + | 24942 | 0.74 | 0.210455 |
Target: 5'- -cAGCAGCUgGGCGgCUUGC-CCGGCa -3' miRNA: 3'- ccUCGUCGA-CCGCgGAGCGuGGCCGg -5' |
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6350 | 5' | -62.5 | NC_001847.1 | + | 28418 | 0.74 | 0.210455 |
Target: 5'- cGGGCGcGCaaccGGCGCC-CGCGCUGGCUa -3' miRNA: 3'- cCUCGU-CGa---CCGCGGaGCGUGGCCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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