miRNA display CGI


Results 61 - 80 of 879 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6350 5' -62.5 NC_001847.1 + 128034 0.74 0.220678
Target:  5'- aGGAGCccGGCcgUGGCGCCUaCGUggucuccuacaACUGGCCc -3'
miRNA:   3'- -CCUCG--UCG--ACCGCGGA-GCG-----------UGGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 127754 0.72 0.27201
Target:  5'- -cAGCAGCUgcGGCGgCUUGC-CCGGCa -3'
miRNA:   3'- ccUCGUCGA--CCGCgGAGCGuGGCCGg -5'
6350 5' -62.5 NC_001847.1 + 127359 0.79 0.102809
Target:  5'- aGGGGCGGCggGGCccgaGCCUCgGCACCaacGGCCg -3'
miRNA:   3'- -CCUCGUCGa-CCG----CGGAG-CGUGG---CCGG- -5'
6350 5' -62.5 NC_001847.1 + 127316 0.69 0.394111
Target:  5'- cGGAGacaCGGCgaccGGCGCCgagGCGgCCGGCUg -3'
miRNA:   3'- -CCUC---GUCGa---CCGCGGag-CGU-GGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 127073 0.7 0.37016
Target:  5'- --cGCGGC-GGUGCCccccucugCGCGCgGGCCg -3'
miRNA:   3'- ccuCGUCGaCCGCGGa-------GCGUGgCCGG- -5'
6350 5' -62.5 NC_001847.1 + 127045 0.69 0.394111
Target:  5'- cGGGGCcacgugGGUcGGCGCCUCGCcgugguggACaGGCCc -3'
miRNA:   3'- -CCUCG------UCGaCCGCGGAGCG--------UGgCCGG- -5'
6350 5' -62.5 NC_001847.1 + 126928 0.74 0.222248
Target:  5'- uGGcGCAGCUgcuucugcuggcacGGCGCCUCGaguggcuuccguCCGGCCu -3'
miRNA:   3'- -CCuCGUCGA--------------CCGCGGAGCgu----------GGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 126910 0.74 0.200642
Target:  5'- uGAG-AGCUGGCGCgggucccagggCUCGCACUcgGGCCa -3'
miRNA:   3'- cCUCgUCGACCGCG-----------GAGCGUGG--CCGG- -5'
6350 5' -62.5 NC_001847.1 + 126797 0.69 0.419042
Target:  5'- uGGGcCGGCuUGGCGCCagucccagaauUCGCACUcgGGCUa -3'
miRNA:   3'- cCUC-GUCG-ACCGCGG-----------AGCGUGG--CCGG- -5'
6350 5' -62.5 NC_001847.1 + 126040 0.67 0.505696
Target:  5'- aGGuGCAGUcgaGGCGCgguuccuggaggugCUCGUcgaGCCGGCUg -3'
miRNA:   3'- -CCuCGUCGa--CCGCG--------------GAGCG---UGGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 125582 0.66 0.59522
Target:  5'- cGGGCGGCgGGCuggacgGCUgcaGCGCUGGCg -3'
miRNA:   3'- cCUCGUCGaCCG------CGGag-CGUGGCCGg -5'
6350 5' -62.5 NC_001847.1 + 125512 0.68 0.489913
Target:  5'- cGAGCGGC-GG-GCCggCGCGgCGGCg -3'
miRNA:   3'- cCUCGUCGaCCgCGGa-GCGUgGCCGg -5'
6350 5' -62.5 NC_001847.1 + 125472 0.66 0.564907
Target:  5'- cGGcGGCAGCUcgcggcgGGCGCgaggaCGC-CCGGCUg -3'
miRNA:   3'- -CC-UCGUCGA-------CCGCGga---GCGuGGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 125382 0.71 0.329618
Target:  5'- aGGAGCGGUaagcgGGCGCCccggggcagggccCGC-CCGGUCg -3'
miRNA:   3'- -CCUCGUCGa----CCGCGGa------------GCGuGGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 125332 0.69 0.419042
Target:  5'- cGGAGCcgcGCUGaaCGCCa-GCgGCCGGCCa -3'
miRNA:   3'- -CCUCGu--CGACc-GCGGagCG-UGGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 125301 0.66 0.592273
Target:  5'- uGGGGCaaGGCUGGCcguggcucauggcgGCggCGgGCCgGGCCg -3'
miRNA:   3'- -CCUCG--UCGACCG--------------CGgaGCgUGG-CCGG- -5'
6350 5' -62.5 NC_001847.1 + 125196 0.72 0.27201
Target:  5'- cGGGGCAGaaGGCGCC-CGgGCCgcGGCg -3'
miRNA:   3'- -CCUCGUCgaCCGCGGaGCgUGG--CCGg -5'
6350 5' -62.5 NC_001847.1 + 125079 0.73 0.248096
Target:  5'- cGGGGC-GCUGG-GCC-CGCG-CGGCCa -3'
miRNA:   3'- -CCUCGuCGACCgCGGaGCGUgGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 125079 0.68 0.453727
Target:  5'- cGAGCGcGC-GGCGCagcgCGCGCguguCGGCCg -3'
miRNA:   3'- cCUCGU-CGaCCGCGga--GCGUG----GCCGG- -5'
6350 5' -62.5 NC_001847.1 + 124959 0.69 0.419042
Target:  5'- cGGcGGCGGCgcgcaaaagccGGCGCagCGgGCCGGCCu -3'
miRNA:   3'- -CC-UCGUCGa----------CCGCGgaGCgUGGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.