miRNA display CGI


Results 1 - 20 of 315 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6351 5' -54.5 NC_001847.1 + 95633 0.66 0.941806
Target:  5'- uGUGGCGGGccGCUCuGGCG-CGgggGGCGg -3'
miRNA:   3'- -CACCGCUUu-CGGGuUUGCuGCa--CCGC- -5'
6351 5' -54.5 NC_001847.1 + 77649 0.66 0.941806
Target:  5'- --cGUGGAGGCCUu--CGACGcgGGCGc -3'
miRNA:   3'- cacCGCUUUCGGGuuuGCUGCa-CCGC- -5'
6351 5' -54.5 NC_001847.1 + 132436 0.66 0.941806
Target:  5'- gGUGGaggacaUGAGGGCCgGGGCGcCGcgGGCGg -3'
miRNA:   3'- -CACC------GCUUUCGGgUUUGCuGCa-CCGC- -5'
6351 5' -54.5 NC_001847.1 + 85430 0.66 0.941806
Target:  5'- -cGGCGAAugauuauagcGGCC---GCGACGUcaaaGGCGg -3'
miRNA:   3'- caCCGCUU----------UCGGguuUGCUGCA----CCGC- -5'
6351 5' -54.5 NC_001847.1 + 71947 0.66 0.941806
Target:  5'- -cGGCGcc-GCgCCGcACGuCGUGGCGc -3'
miRNA:   3'- caCCGCuuuCG-GGUuUGCuGCACCGC- -5'
6351 5' -54.5 NC_001847.1 + 71481 0.66 0.941806
Target:  5'- -cGGCu-GAGCCCGgcAACG--GUGGCGg -3'
miRNA:   3'- caCCGcuUUCGGGU--UUGCugCACCGC- -5'
6351 5' -54.5 NC_001847.1 + 77268 0.66 0.941806
Target:  5'- -gGGCGAca-CCCucguGGCGACGgcGGCGa -3'
miRNA:   3'- caCCGCUuucGGGu---UUGCUGCa-CCGC- -5'
6351 5' -54.5 NC_001847.1 + 95918 0.66 0.941806
Target:  5'- gGUGGUGGaacgagcucuGAGCCCG-GCGccggaACGcUGGCGg -3'
miRNA:   3'- -CACCGCU----------UUCGGGUuUGC-----UGC-ACCGC- -5'
6351 5' -54.5 NC_001847.1 + 72705 0.66 0.941806
Target:  5'- -aGaGCGGccGCCCGGugGGCGgcagcaGGCa -3'
miRNA:   3'- caC-CGCUuuCGGGUUugCUGCa-----CCGc -5'
6351 5' -54.5 NC_001847.1 + 54705 0.66 0.941806
Target:  5'- -cGGCGGGAGCUgGAaaagacccuGCG-CGUGaGCGu -3'
miRNA:   3'- caCCGCUUUCGGgUU---------UGCuGCAC-CGC- -5'
6351 5' -54.5 NC_001847.1 + 29623 0.66 0.941806
Target:  5'- gGUGGaggacaUGAGGGCCgGGGCGcCGcgGGCGg -3'
miRNA:   3'- -CACC------GCUUUCGGgUUUGCuGCa-CCGC- -5'
6351 5' -54.5 NC_001847.1 + 1263 0.66 0.936995
Target:  5'- -cGGCGcgccGAGCCCccagcgguuGGCGGCGcGGUGg -3'
miRNA:   3'- caCCGCu---UUCGGGu--------UUGCUGCaCCGC- -5'
6351 5' -54.5 NC_001847.1 + 70637 0.66 0.936995
Target:  5'- -aGGCGcugcgcGGgCUGGAUGACGUGGCc -3'
miRNA:   3'- caCCGCuu----UCgGGUUUGCUGCACCGc -5'
6351 5' -54.5 NC_001847.1 + 124554 0.66 0.936995
Target:  5'- -cGGCGccGGCCCGcGCGcGCGggggGGCc -3'
miRNA:   3'- caCCGCuuUCGGGUuUGC-UGCa---CCGc -5'
6351 5' -54.5 NC_001847.1 + 95761 0.66 0.936995
Target:  5'- -cGGCGccGGCUCcccGACGGCGUcGCGg -3'
miRNA:   3'- caCCGCuuUCGGGu--UUGCUGCAcCGC- -5'
6351 5' -54.5 NC_001847.1 + 87713 0.66 0.936995
Target:  5'- -cGGCGGcgAAGCC--GACGACGUcGCa -3'
miRNA:   3'- caCCGCU--UUCGGguUUGCUGCAcCGc -5'
6351 5' -54.5 NC_001847.1 + 104076 0.66 0.936995
Target:  5'- -cGGCGcgccGAGCCCccagcgguuGGCGGCGcGGUGg -3'
miRNA:   3'- caCCGCu---UUCGGGu--------UUGCUGCaCCGC- -5'
6351 5' -54.5 NC_001847.1 + 74115 0.66 0.936995
Target:  5'- -gGGCGGccgcGCCCGGggaugugacgcGCGGCGccgaUGGCGg -3'
miRNA:   3'- caCCGCUuu--CGGGUU-----------UGCUGC----ACCGC- -5'
6351 5' -54.5 NC_001847.1 + 21741 0.66 0.936995
Target:  5'- -cGGCGccGGCCCGcGCGcGCGggggGGCc -3'
miRNA:   3'- caCCGCuuUCGGGUuUGC-UGCa---CCGc -5'
6351 5' -54.5 NC_001847.1 + 31311 0.66 0.936995
Target:  5'- -cGGCGc--GCCgCGGGCGGCGgccUGGUGg -3'
miRNA:   3'- caCCGCuuuCGG-GUUUGCUGC---ACCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.