Results 1 - 20 of 315 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6351 | 5' | -54.5 | NC_001847.1 | + | 104726 | 0.78 | 0.347099 |
Target: 5'- -cGuGCGAGAGCCCGccGCGGCGcGGCGg -3' miRNA: 3'- caC-CGCUUUCGGGUu-UGCUGCaCCGC- -5' |
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6351 | 5' | -54.5 | NC_001847.1 | + | 77926 | 0.74 | 0.528212 |
Target: 5'- -cGGCGAcGAGCCCcGGCGGCcggGGCGu -3' miRNA: 3'- caCCGCU-UUCGGGuUUGCUGca-CCGC- -5' |
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6351 | 5' | -54.5 | NC_001847.1 | + | 28216 | 0.74 | 0.548423 |
Target: 5'- -cGGCGuucGGCCCGGugaacaugcagcGCGugGUGGUGg -3' miRNA: 3'- caCCGCuu-UCGGGUU------------UGCugCACCGC- -5' |
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6351 | 5' | -54.5 | NC_001847.1 | + | 85430 | 0.66 | 0.941806 |
Target: 5'- -cGGCGAAugauuauagcGGCC---GCGACGUcaaaGGCGg -3' miRNA: 3'- caCCGCUU----------UCGGguuUGCUGCA----CCGC- -5' |
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6351 | 5' | -54.5 | NC_001847.1 | + | 37322 | 0.75 | 0.45902 |
Target: 5'- uGUGGCGGcacgcGCCCGAcgcggccacgcgcGCGAcCGUGGCGg -3' miRNA: 3'- -CACCGCUuu---CGGGUU-------------UGCU-GCACCGC- -5' |
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6351 | 5' | -54.5 | NC_001847.1 | + | 27529 | 0.75 | 0.459961 |
Target: 5'- -cGGCGggGacGCCCGAgaacgGCGGCGcGGCGg -3' miRNA: 3'- caCCGCuuU--CGGGUU-----UGCUGCaCCGC- -5' |
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6351 | 5' | -54.5 | NC_001847.1 | + | 20521 | 0.75 | 0.47901 |
Target: 5'- -gGGCGggGGCCCAcuggAAgGACGUgaacuucucGGCGg -3' miRNA: 3'- caCCGCuuUCGGGU----UUgCUGCA---------CCGC- -5' |
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6351 | 5' | -54.5 | NC_001847.1 | + | 52047 | 0.75 | 0.47901 |
Target: 5'- -aGGCGGAGGCCCGcccggagguGugGGCG-GGCa -3' miRNA: 3'- caCCGCUUUCGGGU---------UugCUGCaCCGc -5' |
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6351 | 5' | -54.5 | NC_001847.1 | + | 5275 | 0.75 | 0.496479 |
Target: 5'- -aGGCGAAAGUCCAcguccagGACGAUGUugguuacGGCGa -3' miRNA: 3'- caCCGCUUUCGGGU-------UUGCUGCA-------CCGC- -5' |
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6351 | 5' | -54.5 | NC_001847.1 | + | 78076 | 0.75 | 0.508283 |
Target: 5'- -cGGCGcaGGAGUCCGGGCGGCGgccgGGCu -3' miRNA: 3'- caCCGC--UUUCGGGUUUGCUGCa---CCGc -5' |
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6351 | 5' | -54.5 | NC_001847.1 | + | 104889 | 0.75 | 0.497458 |
Target: 5'- gGUGGCGGcgagcgccccgcgGGGCCCGcGCGGCGgcgGGCc -3' miRNA: 3'- -CACCGCU-------------UUCGGGUuUGCUGCa--CCGc -5' |
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6351 | 5' | -54.5 | NC_001847.1 | + | 12493 | 0.75 | 0.492572 |
Target: 5'- -cGGCGggGGCggccaagaacccgggCCAGACGACGaaGGCGa -3' miRNA: 3'- caCCGCuuUCG---------------GGUUUGCUGCa-CCGC- -5' |
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6351 | 5' | -54.5 | NC_001847.1 | + | 80909 | 0.76 | 0.423119 |
Target: 5'- cGUGGCc---GCCCAAGCGGCcGUGGCc -3' miRNA: 3'- -CACCGcuuuCGGGUUUGCUG-CACCGc -5' |
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6351 | 5' | -54.5 | NC_001847.1 | + | 33498 | 0.75 | 0.498438 |
Target: 5'- -cGGCGgcGGCgCGGGCGGCGgcgGGCGc -3' miRNA: 3'- caCCGCuuUCGgGUUUGCUGCa--CCGC- -5' |
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6351 | 5' | -54.5 | NC_001847.1 | + | 27734 | 0.76 | 0.432165 |
Target: 5'- -cGGCGGAAGCCgcGGCGGCGguugcGGCGg -3' miRNA: 3'- caCCGCUUUCGGguUUGCUGCa----CCGC- -5' |
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6351 | 5' | -54.5 | NC_001847.1 | + | 104244 | 0.75 | 0.488679 |
Target: 5'- gGUGcGCG--GGCCCAGGCG-CGUGGCc -3' miRNA: 3'- -CAC-CGCuuUCGGGUUUGCuGCACCGc -5' |
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6351 | 5' | -54.5 | NC_001847.1 | + | 59576 | 0.75 | 0.498438 |
Target: 5'- -cGGCGGAAGCUCuGGCuGGCGUGcGCGu -3' miRNA: 3'- caCCGCUUUCGGGuUUG-CUGCAC-CGC- -5' |
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6351 | 5' | -54.5 | NC_001847.1 | + | 36983 | 0.74 | 0.538285 |
Target: 5'- -cGGCGAGcgGGCCCGcgccgAGCGGCGgcGGCGc -3' miRNA: 3'- caCCGCUU--UCGGGU-----UUGCUGCa-CCGC- -5' |
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6351 | 5' | -54.5 | NC_001847.1 | + | 133553 | 0.76 | 0.441323 |
Target: 5'- -cGcGCGcuGGCCCGAGCGGCGcgcUGGCGc -3' miRNA: 3'- caC-CGCuuUCGGGUUUGCUGC---ACCGC- -5' |
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6351 | 5' | -54.5 | NC_001847.1 | + | 30385 | 0.75 | 0.469436 |
Target: 5'- cUGGUGcgGGCgCAGACGGCGcUGGCGc -3' miRNA: 3'- cACCGCuuUCGgGUUUGCUGC-ACCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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