miRNA display CGI


Results 1 - 20 of 315 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6351 5' -54.5 NC_001847.1 + 104726 0.78 0.347099
Target:  5'- -cGuGCGAGAGCCCGccGCGGCGcGGCGg -3'
miRNA:   3'- caC-CGCUUUCGGGUu-UGCUGCaCCGC- -5'
6351 5' -54.5 NC_001847.1 + 77926 0.74 0.528212
Target:  5'- -cGGCGAcGAGCCCcGGCGGCcggGGCGu -3'
miRNA:   3'- caCCGCU-UUCGGGuUUGCUGca-CCGC- -5'
6351 5' -54.5 NC_001847.1 + 28216 0.74 0.548423
Target:  5'- -cGGCGuucGGCCCGGugaacaugcagcGCGugGUGGUGg -3'
miRNA:   3'- caCCGCuu-UCGGGUU------------UGCugCACCGC- -5'
6351 5' -54.5 NC_001847.1 + 85430 0.66 0.941806
Target:  5'- -cGGCGAAugauuauagcGGCC---GCGACGUcaaaGGCGg -3'
miRNA:   3'- caCCGCUU----------UCGGguuUGCUGCA----CCGC- -5'
6351 5' -54.5 NC_001847.1 + 37322 0.75 0.45902
Target:  5'- uGUGGCGGcacgcGCCCGAcgcggccacgcgcGCGAcCGUGGCGg -3'
miRNA:   3'- -CACCGCUuu---CGGGUU-------------UGCU-GCACCGC- -5'
6351 5' -54.5 NC_001847.1 + 27529 0.75 0.459961
Target:  5'- -cGGCGggGacGCCCGAgaacgGCGGCGcGGCGg -3'
miRNA:   3'- caCCGCuuU--CGGGUU-----UGCUGCaCCGC- -5'
6351 5' -54.5 NC_001847.1 + 20521 0.75 0.47901
Target:  5'- -gGGCGggGGCCCAcuggAAgGACGUgaacuucucGGCGg -3'
miRNA:   3'- caCCGCuuUCGGGU----UUgCUGCA---------CCGC- -5'
6351 5' -54.5 NC_001847.1 + 52047 0.75 0.47901
Target:  5'- -aGGCGGAGGCCCGcccggagguGugGGCG-GGCa -3'
miRNA:   3'- caCCGCUUUCGGGU---------UugCUGCaCCGc -5'
6351 5' -54.5 NC_001847.1 + 5275 0.75 0.496479
Target:  5'- -aGGCGAAAGUCCAcguccagGACGAUGUugguuacGGCGa -3'
miRNA:   3'- caCCGCUUUCGGGU-------UUGCUGCA-------CCGC- -5'
6351 5' -54.5 NC_001847.1 + 78076 0.75 0.508283
Target:  5'- -cGGCGcaGGAGUCCGGGCGGCGgccgGGCu -3'
miRNA:   3'- caCCGC--UUUCGGGUUUGCUGCa---CCGc -5'
6351 5' -54.5 NC_001847.1 + 104889 0.75 0.497458
Target:  5'- gGUGGCGGcgagcgccccgcgGGGCCCGcGCGGCGgcgGGCc -3'
miRNA:   3'- -CACCGCU-------------UUCGGGUuUGCUGCa--CCGc -5'
6351 5' -54.5 NC_001847.1 + 12493 0.75 0.492572
Target:  5'- -cGGCGggGGCggccaagaacccgggCCAGACGACGaaGGCGa -3'
miRNA:   3'- caCCGCuuUCG---------------GGUUUGCUGCa-CCGC- -5'
6351 5' -54.5 NC_001847.1 + 80909 0.76 0.423119
Target:  5'- cGUGGCc---GCCCAAGCGGCcGUGGCc -3'
miRNA:   3'- -CACCGcuuuCGGGUUUGCUG-CACCGc -5'
6351 5' -54.5 NC_001847.1 + 33498 0.75 0.498438
Target:  5'- -cGGCGgcGGCgCGGGCGGCGgcgGGCGc -3'
miRNA:   3'- caCCGCuuUCGgGUUUGCUGCa--CCGC- -5'
6351 5' -54.5 NC_001847.1 + 27734 0.76 0.432165
Target:  5'- -cGGCGGAAGCCgcGGCGGCGguugcGGCGg -3'
miRNA:   3'- caCCGCUUUCGGguUUGCUGCa----CCGC- -5'
6351 5' -54.5 NC_001847.1 + 104244 0.75 0.488679
Target:  5'- gGUGcGCG--GGCCCAGGCG-CGUGGCc -3'
miRNA:   3'- -CAC-CGCuuUCGGGUUUGCuGCACCGc -5'
6351 5' -54.5 NC_001847.1 + 59576 0.75 0.498438
Target:  5'- -cGGCGGAAGCUCuGGCuGGCGUGcGCGu -3'
miRNA:   3'- caCCGCUUUCGGGuUUG-CUGCAC-CGC- -5'
6351 5' -54.5 NC_001847.1 + 36983 0.74 0.538285
Target:  5'- -cGGCGAGcgGGCCCGcgccgAGCGGCGgcGGCGc -3'
miRNA:   3'- caCCGCUU--UCGGGU-----UUGCUGCa-CCGC- -5'
6351 5' -54.5 NC_001847.1 + 133553 0.76 0.441323
Target:  5'- -cGcGCGcuGGCCCGAGCGGCGcgcUGGCGc -3'
miRNA:   3'- caC-CGCuuUCGGGUUUGCUGC---ACCGC- -5'
6351 5' -54.5 NC_001847.1 + 30385 0.75 0.469436
Target:  5'- cUGGUGcgGGCgCAGACGGCGcUGGCGc -3'
miRNA:   3'- cACCGCuuUCGgGUUUGCUGC-ACCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.