Results 1 - 20 of 315 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
6351 | 5' | -54.5 | NC_001847.1 | + | 128099 | 1.08 | 0.004205 |
Target: 5'- gGUGGCGAAAGCCCAAACGACGUGGCGc -3' miRNA: 3'- -CACCGCUUUCGGGUUUGCUGCACCGC- -5' |
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6351 | 5' | -54.5 | NC_001847.1 | + | 38430 | 0.82 | 0.194291 |
Target: 5'- -gGGCGGGAGCCCGAGgGGCG-GGCa -3' miRNA: 3'- caCCGCUUUCGGGUUUgCUGCaCCGc -5' |
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6351 | 5' | -54.5 | NC_001847.1 | + | 13889 | 0.78 | 0.331588 |
Target: 5'- uUGGcCGGGAGCCCAGugccACGACgGUGGCu -3' miRNA: 3'- cACC-GCUUUCGGGUU----UGCUG-CACCGc -5' |
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6351 | 5' | -54.5 | NC_001847.1 | + | 39824 | 0.78 | 0.331588 |
Target: 5'- -cGGCG--GGCCCGAGCGcuuccuGCGUGGCGc -3' miRNA: 3'- caCCGCuuUCGGGUUUGC------UGCACCGC- -5' |
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6351 | 5' | -54.5 | NC_001847.1 | + | 104726 | 0.78 | 0.347099 |
Target: 5'- -cGuGCGAGAGCCCGccGCGGCGcGGCGg -3' miRNA: 3'- caC-CGCUUUCGGGUu-UGCUGCaCCGC- -5' |
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6351 | 5' | -54.5 | NC_001847.1 | + | 1913 | 0.78 | 0.347099 |
Target: 5'- -cGuGCGAGAGCCCGccGCGGCGcGGCGg -3' miRNA: 3'- caC-CGCUUUCGGGUu-UGCUGCaCCGC- -5' |
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6351 | 5' | -54.5 | NC_001847.1 | + | 132498 | 0.76 | 0.423119 |
Target: 5'- -gGGCGAAGGCgCCGcaAGCGGCGacGGCGg -3' miRNA: 3'- caCCGCUUUCG-GGU--UUGCUGCa-CCGC- -5' |
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6351 | 5' | -54.5 | NC_001847.1 | + | 80909 | 0.76 | 0.423119 |
Target: 5'- cGUGGCc---GCCCAAGCGGCcGUGGCc -3' miRNA: 3'- -CACCGcuuuCGGGUUUGCUG-CACCGc -5' |
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6351 | 5' | -54.5 | NC_001847.1 | + | 27734 | 0.76 | 0.432165 |
Target: 5'- -cGGCGGAAGCCgcGGCGGCGguugcGGCGg -3' miRNA: 3'- caCCGCUUUCGGguUUGCUGCa----CCGC- -5' |
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6351 | 5' | -54.5 | NC_001847.1 | + | 30740 | 0.76 | 0.441323 |
Target: 5'- -cGcGCGcuGGCCCGAGCGGCGcgcUGGCGc -3' miRNA: 3'- caC-CGCuuUCGGGUUUGCUGC---ACCGC- -5' |
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6351 | 5' | -54.5 | NC_001847.1 | + | 88379 | 0.76 | 0.441323 |
Target: 5'- -cGGCGGAccGGCCCcgcGCGGCG-GGCGg -3' miRNA: 3'- caCCGCUU--UCGGGuu-UGCUGCaCCGC- -5' |
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6351 | 5' | -54.5 | NC_001847.1 | + | 133553 | 0.76 | 0.441323 |
Target: 5'- -cGcGCGcuGGCCCGAGCGGCGcgcUGGCGc -3' miRNA: 3'- caC-CGCuuUCGGGUUUGCUGC---ACCGC- -5' |
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6351 | 5' | -54.5 | NC_001847.1 | + | 76508 | 0.76 | 0.450589 |
Target: 5'- -cGGCGGAaaucuucguGGCCCAGAUGAUGcGGCa -3' miRNA: 3'- caCCGCUU---------UCGGGUUUGCUGCaCCGc -5' |
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6351 | 5' | -54.5 | NC_001847.1 | + | 37322 | 0.75 | 0.45902 |
Target: 5'- uGUGGCGGcacgcGCCCGAcgcggccacgcgcGCGAcCGUGGCGg -3' miRNA: 3'- -CACCGCUuu---CGGGUU-------------UGCU-GCACCGC- -5' |
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6351 | 5' | -54.5 | NC_001847.1 | + | 27529 | 0.75 | 0.459961 |
Target: 5'- -cGGCGggGacGCCCGAgaacgGCGGCGcGGCGg -3' miRNA: 3'- caCCGCuuU--CGGGUU-----UGCUGCaCCGC- -5' |
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6351 | 5' | -54.5 | NC_001847.1 | + | 120933 | 0.75 | 0.469436 |
Target: 5'- -gGGCGGgcGCgCGGGCGugGUGGCu -3' miRNA: 3'- caCCGCUuuCGgGUUUGCugCACCGc -5' |
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6351 | 5' | -54.5 | NC_001847.1 | + | 30385 | 0.75 | 0.469436 |
Target: 5'- cUGGUGcgGGCgCAGACGGCGcUGGCGc -3' miRNA: 3'- cACCGCuuUCGgGUUUGCUGC-ACCGC- -5' |
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6351 | 5' | -54.5 | NC_001847.1 | + | 20521 | 0.75 | 0.47901 |
Target: 5'- -gGGCGggGGCCCAcuggAAgGACGUgaacuucucGGCGg -3' miRNA: 3'- caCCGCuuUCGGGU----UUgCUGCA---------CCGC- -5' |
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6351 | 5' | -54.5 | NC_001847.1 | + | 52047 | 0.75 | 0.47901 |
Target: 5'- -aGGCGGAGGCCCGcccggagguGugGGCG-GGCa -3' miRNA: 3'- caCCGCUUUCGGGU---------UugCUGCaCCGc -5' |
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6351 | 5' | -54.5 | NC_001847.1 | + | 1431 | 0.75 | 0.488679 |
Target: 5'- gGUGcGCG--GGCCCAGGCG-CGUGGCc -3' miRNA: 3'- -CAC-CGCuuUCGGGUUUGCuGCACCGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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