miRNA display CGI


Results 21 - 40 of 315 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6351 5' -54.5 NC_001847.1 + 104244 0.75 0.488679
Target:  5'- gGUGcGCG--GGCCCAGGCG-CGUGGCc -3'
miRNA:   3'- -CAC-CGCuuUCGGGUUUGCuGCACCGc -5'
6351 5' -54.5 NC_001847.1 + 12493 0.75 0.492572
Target:  5'- -cGGCGggGGCggccaagaacccgggCCAGACGACGaaGGCGa -3'
miRNA:   3'- caCCGCuuUCG---------------GGUUUGCUGCa-CCGC- -5'
6351 5' -54.5 NC_001847.1 + 5275 0.75 0.496479
Target:  5'- -aGGCGAAAGUCCAcguccagGACGAUGUugguuacGGCGa -3'
miRNA:   3'- caCCGCUUUCGGGU-------UUGCUGCA-------CCGC- -5'
6351 5' -54.5 NC_001847.1 + 2076 0.75 0.497458
Target:  5'- gGUGGCGGcgagcgccccgcgGGGCCCGcGCGGCGgcgGGCc -3'
miRNA:   3'- -CACCGCU-------------UUCGGGUuUGCUGCa--CCGc -5'
6351 5' -54.5 NC_001847.1 + 29647 0.75 0.497458
Target:  5'- gGUGGCugcGGAcgcgcugcccuucAGCgCAAACGGCGUGGCGc -3'
miRNA:   3'- -CACCG---CUU-------------UCGgGUUUGCUGCACCGC- -5'
6351 5' -54.5 NC_001847.1 + 104889 0.75 0.497458
Target:  5'- gGUGGCGGcgagcgccccgcgGGGCCCGcGCGGCGgcgGGCc -3'
miRNA:   3'- -CACCGCU-------------UUCGGGUuUGCUGCa--CCGc -5'
6351 5' -54.5 NC_001847.1 + 33498 0.75 0.498438
Target:  5'- -cGGCGgcGGCgCGGGCGGCGgcgGGCGc -3'
miRNA:   3'- caCCGCuuUCGgGUUUGCUGCa--CCGC- -5'
6351 5' -54.5 NC_001847.1 + 59576 0.75 0.498438
Target:  5'- -cGGCGGAAGCUCuGGCuGGCGUGcGCGu -3'
miRNA:   3'- caCCGCUUUCGGGuUUG-CUGCAC-CGC- -5'
6351 5' -54.5 NC_001847.1 + 81071 0.75 0.498438
Target:  5'- -cGGCGAAGGCggcGACGGCGcUGGCGg -3'
miRNA:   3'- caCCGCUUUCGgguUUGCUGC-ACCGC- -5'
6351 5' -54.5 NC_001847.1 + 78076 0.75 0.508283
Target:  5'- -cGGCGcaGGAGUCCGGGCGGCGgccgGGCu -3'
miRNA:   3'- caCCGC--UUUCGGGUUUGCUGCa---CCGc -5'
6351 5' -54.5 NC_001847.1 + 86357 0.74 0.518209
Target:  5'- -cGGCGAGGcGCCCGcaGACGAgGcGGCGg -3'
miRNA:   3'- caCCGCUUU-CGGGU--UUGCUgCaCCGC- -5'
6351 5' -54.5 NC_001847.1 + 77926 0.74 0.528212
Target:  5'- -cGGCGAcGAGCCCcGGCGGCcggGGCGu -3'
miRNA:   3'- caCCGCU-UUCGGGuUUGCUGca-CCGC- -5'
6351 5' -54.5 NC_001847.1 + 112104 0.74 0.538285
Target:  5'- -aGGUGGAcuGGCUCGAGCGgcGCGUGGCc -3'
miRNA:   3'- caCCGCUU--UCGGGUUUGC--UGCACCGc -5'
6351 5' -54.5 NC_001847.1 + 36983 0.74 0.538285
Target:  5'- -cGGCGAGcgGGCCCGcgccgAGCGGCGgcGGCGc -3'
miRNA:   3'- caCCGCUU--UCGGGU-----UUGCUGCa-CCGC- -5'
6351 5' -54.5 NC_001847.1 + 37223 0.74 0.548423
Target:  5'- uUGGCGgcGGCgCGGACGACccGGCGg -3'
miRNA:   3'- cACCGCuuUCGgGUUUGCUGcaCCGC- -5'
6351 5' -54.5 NC_001847.1 + 109851 0.74 0.548423
Target:  5'- -cGGCGAGGGCgCC--ACGugGUGcGCGg -3'
miRNA:   3'- caCCGCUUUCG-GGuuUGCugCAC-CGC- -5'
6351 5' -54.5 NC_001847.1 + 28216 0.74 0.548423
Target:  5'- -cGGCGuucGGCCCGGugaacaugcagcGCGugGUGGUGg -3'
miRNA:   3'- caCCGCuu-UCGGGUU------------UGCugCACCGC- -5'
6351 5' -54.5 NC_001847.1 + 37998 0.74 0.548423
Target:  5'- uUGG-GGAGGCCCGggUGGCcacgGUGGCGg -3'
miRNA:   3'- cACCgCUUUCGGGUuuGCUG----CACCGC- -5'
6351 5' -54.5 NC_001847.1 + 14332 0.74 0.55862
Target:  5'- -cGGUG--GGgCCGGGCGugGUGGCGg -3'
miRNA:   3'- caCCGCuuUCgGGUUUGCugCACCGC- -5'
6351 5' -54.5 NC_001847.1 + 53963 0.74 0.55862
Target:  5'- cUGGCGccgccgcGAGCCCuccGAGCGGCGcGGCGg -3'
miRNA:   3'- cACCGCu------UUCGGG---UUUGCUGCaCCGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.