miRNA display CGI


Results 21 - 40 of 315 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6351 5' -54.5 NC_001847.1 + 5446 0.66 0.926634
Target:  5'- --uGCGuguuGCCC-GACGGCGgUGGCGg -3'
miRNA:   3'- cacCGCuuu-CGGGuUUGCUGC-ACCGC- -5'
6351 5' -54.5 NC_001847.1 + 5926 0.66 0.921081
Target:  5'- -aGGCGGAugGGCggCGGACGACG-GGCc -3'
miRNA:   3'- caCCGCUU--UCGg-GUUUGCUGCaCCGc -5'
6351 5' -54.5 NC_001847.1 + 6427 0.68 0.867936
Target:  5'- -aGGCGAGu-CCCGAgggguuagGCGGCGcGGCGa -3'
miRNA:   3'- caCCGCUUucGGGUU--------UGCUGCaCCGC- -5'
6351 5' -54.5 NC_001847.1 + 8122 0.7 0.743786
Target:  5'- -aGGCGcGGGGCCCcAGgGGCG-GGCGg -3'
miRNA:   3'- caCCGC-UUUCGGGuUUgCUGCaCCGC- -5'
6351 5' -54.5 NC_001847.1 + 8567 0.67 0.909235
Target:  5'- -cGGCGAuGAGgCgAGGCaGCGUGGUGg -3'
miRNA:   3'- caCCGCU-UUCgGgUUUGcUGCACCGC- -5'
6351 5' -54.5 NC_001847.1 + 10129 0.66 0.914688
Target:  5'- -cGGCGAGcgGGCCCGGccguagcGCGAgCGggagGGCu -3'
miRNA:   3'- caCCGCUU--UCGGGUU-------UGCU-GCa---CCGc -5'
6351 5' -54.5 NC_001847.1 + 10851 0.67 0.889641
Target:  5'- -cGGCGcguGGCCgAGgcGCGGCG-GGCGc -3'
miRNA:   3'- caCCGCuu-UCGGgUU--UGCUGCaCCGC- -5'
6351 5' -54.5 NC_001847.1 + 10943 0.68 0.843436
Target:  5'- cUGGCGcggcuGGCCUuuGCGcauauguACGUGGCGc -3'
miRNA:   3'- cACCGCuu---UCGGGuuUGC-------UGCACCGC- -5'
6351 5' -54.5 NC_001847.1 + 12311 0.72 0.676822
Target:  5'- -gGGCGcgGGCCCGGugGGCGcgcccgccggcucgcUGGUGa -3'
miRNA:   3'- caCCGCuuUCGGGUUugCUGC---------------ACCGC- -5'
6351 5' -54.5 NC_001847.1 + 12493 0.75 0.492572
Target:  5'- -cGGCGggGGCggccaagaacccgggCCAGACGACGaaGGCGa -3'
miRNA:   3'- caCCGCuuUCG---------------GGUUUGCUGCa-CCGC- -5'
6351 5' -54.5 NC_001847.1 + 13889 0.78 0.331588
Target:  5'- uUGGcCGGGAGCCCAGugccACGACgGUGGCu -3'
miRNA:   3'- cACC-GCUUUCGGGUU----UGCUG-CACCGc -5'
6351 5' -54.5 NC_001847.1 + 14139 0.67 0.909235
Target:  5'- -gGGCGggGcccgcGCCUggGCGGCcgcuagGGCGa -3'
miRNA:   3'- caCCGCuuU-----CGGGuuUGCUGca----CCGC- -5'
6351 5' -54.5 NC_001847.1 + 14211 0.7 0.743786
Target:  5'- cUGGCGGucAGGCCgGccGGgGGCGUGGUGa -3'
miRNA:   3'- cACCGCU--UUCGGgU--UUgCUGCACCGC- -5'
6351 5' -54.5 NC_001847.1 + 14332 0.74 0.55862
Target:  5'- -cGGUG--GGgCCGGGCGugGUGGCGg -3'
miRNA:   3'- caCCGCuuUCgGGUUUGCugCACCGC- -5'
6351 5' -54.5 NC_001847.1 + 15311 0.67 0.909235
Target:  5'- -cGGCGucggGGGCCgCGGGCGuaGCGggGGCGg -3'
miRNA:   3'- caCCGCu---UUCGG-GUUUGC--UGCa-CCGC- -5'
6351 5' -54.5 NC_001847.1 + 15525 0.71 0.713727
Target:  5'- -cGGCGGGAGCCgCGGGCuGC-UGGCGc -3'
miRNA:   3'- caCCGCUUUCGG-GUUUGcUGcACCGC- -5'
6351 5' -54.5 NC_001847.1 + 15785 0.72 0.651919
Target:  5'- -cGGCGGcAAGCgCCGcGCGGCGggaGGCGg -3'
miRNA:   3'- caCCGCU-UUCG-GGUuUGCUGCa--CCGC- -5'
6351 5' -54.5 NC_001847.1 + 16808 0.67 0.889641
Target:  5'- -aGGCcaaAGAGCCCAAACuccgGAUcgGUGGCGc -3'
miRNA:   3'- caCCGc--UUUCGGGUUUG----CUG--CACCGC- -5'
6351 5' -54.5 NC_001847.1 + 17258 0.66 0.915281
Target:  5'- -gGGCGGggaagcagccgcAGGCCCAGuCGcCGgUGGCGu -3'
miRNA:   3'- caCCGCU------------UUCGGGUUuGCuGC-ACCGC- -5'
6351 5' -54.5 NC_001847.1 + 17643 0.73 0.610261
Target:  5'- uUGGU--AAGCCCAgccgacgucGACGACGUcGGCGg -3'
miRNA:   3'- cACCGcuUUCGGGU---------UUGCUGCA-CCGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.