miRNA display CGI


Results 41 - 60 of 315 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6351 5' -54.5 NC_001847.1 + 19196 0.71 0.733854
Target:  5'- -gGGCGGGgucuguGGCCCAGACGGCGaGuGCc -3'
miRNA:   3'- caCCGCUU------UCGGGUUUGCUGCaC-CGc -5'
6351 5' -54.5 NC_001847.1 + 19664 0.68 0.850755
Target:  5'- -aGGgGcAAGCCCAGACGugcccgcgcgggUGUGGCGu -3'
miRNA:   3'- caCCgCuUUCGGGUUUGCu-----------GCACCGC- -5'
6351 5' -54.5 NC_001847.1 + 20521 0.75 0.47901
Target:  5'- -gGGCGggGGCCCAcuggAAgGACGUgaacuucucGGCGg -3'
miRNA:   3'- caCCGCuuUCGGGU----UUgCUGCA---------CCGC- -5'
6351 5' -54.5 NC_001847.1 + 21665 0.7 0.743786
Target:  5'- -gGGCGAGccCCCcGGCGACGgguaUGGCGa -3'
miRNA:   3'- caCCGCUUucGGGuUUGCUGC----ACCGC- -5'
6351 5' -54.5 NC_001847.1 + 21741 0.66 0.936995
Target:  5'- -cGGCGccGGCCCGcGCGcGCGggggGGCc -3'
miRNA:   3'- caCCGCuuUCGGGUuUGC-UGCa---CCGc -5'
6351 5' -54.5 NC_001847.1 + 22114 0.71 0.727851
Target:  5'- -gGGCGAcagcgggcgcgcccuGGGCCCGgcGGCGGCGgcGGCGc -3'
miRNA:   3'- caCCGCU---------------UUCGGGU--UUGCUGCa-CCGC- -5'
6351 5' -54.5 NC_001847.1 + 22118 0.66 0.926634
Target:  5'- -cGGCGu---CCCAGACG-CGcGGCGg -3'
miRNA:   3'- caCCGCuuucGGGUUUGCuGCaCCGC- -5'
6351 5' -54.5 NC_001847.1 + 22189 0.72 0.648797
Target:  5'- -gGGCGAGAGCugcagcagcgccucCCAgcacgcguccGugGGCGUGGCGc -3'
miRNA:   3'- caCCGCUUUCG--------------GGU----------UugCUGCACCGC- -5'
6351 5' -54.5 NC_001847.1 + 22428 0.67 0.909235
Target:  5'- -gGGCG-GGGCCCGAgaccacGCGGuCG-GGCGa -3'
miRNA:   3'- caCCGCuUUCGGGUU------UGCU-GCaCCGC- -5'
6351 5' -54.5 NC_001847.1 + 22592 0.67 0.909235
Target:  5'- -gGGC-AGGGCCCGccCGgucGCGUGGCa -3'
miRNA:   3'- caCCGcUUUCGGGUuuGC---UGCACCGc -5'
6351 5' -54.5 NC_001847.1 + 23384 0.69 0.79173
Target:  5'- -gGGUGggGGCUgGGugGGCGgagcucacuUGGCGg -3'
miRNA:   3'- caCCGCuuUCGGgUUugCUGC---------ACCGC- -5'
6351 5' -54.5 NC_001847.1 + 23425 0.66 0.926634
Target:  5'- -cGGCGggGcGUCCGGGgucguCGGCGgGGCGu -3'
miRNA:   3'- caCCGCuuU-CGGGUUU-----GCUGCaCCGC- -5'
6351 5' -54.5 NC_001847.1 + 27166 0.67 0.882635
Target:  5'- -cGGCGGccAGCCCAAuaauguCGGCGgGGUGc -3'
miRNA:   3'- caCCGCUu-UCGGGUUu-----GCUGCaCCGC- -5'
6351 5' -54.5 NC_001847.1 + 27529 0.75 0.459961
Target:  5'- -cGGCGggGacGCCCGAgaacgGCGGCGcGGCGg -3'
miRNA:   3'- caCCGCuuU--CGGGUU-----UGCUGCaCCGC- -5'
6351 5' -54.5 NC_001847.1 + 27734 0.76 0.432165
Target:  5'- -cGGCGGAAGCCgcGGCGGCGguugcGGCGg -3'
miRNA:   3'- caCCGCUUUCGGguUUGCUGCa----CCGC- -5'
6351 5' -54.5 NC_001847.1 + 27893 0.66 0.915281
Target:  5'- aUGGCGAGgucgccGGCCCGGccGCGcuuGCGgaggccagGGCGg -3'
miRNA:   3'- cACCGCUU------UCGGGUU--UGC---UGCa-------CCGC- -5'
6351 5' -54.5 NC_001847.1 + 28130 0.68 0.852359
Target:  5'- -cGGCGAcguuGGGCCCGAggacugcaGCGACGccgGGUc -3'
miRNA:   3'- caCCGCU----UUCGGGUU--------UGCUGCa--CCGc -5'
6351 5' -54.5 NC_001847.1 + 28194 0.69 0.827462
Target:  5'- --aGCGAugccGGGCCCGagGACGAUGggGGCGa -3'
miRNA:   3'- cacCGCU----UUCGGGU--UUGCUGCa-CCGC- -5'
6351 5' -54.5 NC_001847.1 + 28216 0.74 0.548423
Target:  5'- -cGGCGuucGGCCCGGugaacaugcagcGCGugGUGGUGg -3'
miRNA:   3'- caCCGCuu-UCGGGUU------------UGCugCACCGC- -5'
6351 5' -54.5 NC_001847.1 + 29097 0.66 0.931938
Target:  5'- -cGGCGAGcacGGCgCGGGCGGCGc-GCGa -3'
miRNA:   3'- caCCGCUU---UCGgGUUUGCUGCacCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.