miRNA display CGI


Results 41 - 60 of 315 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6351 5' -54.5 NC_001847.1 + 117039 0.68 0.875398
Target:  5'- -cGGCGggGGCUCGc-CGAgGaGGCGg -3'
miRNA:   3'- caCCGCuuUCGGGUuuGCUgCaCCGC- -5'
6351 5' -54.5 NC_001847.1 + 116764 0.68 0.87832
Target:  5'- -aGGCGAGgacgccgaggcaucgGGCCCGccGACGAUcuugGGCGa -3'
miRNA:   3'- caCCGCUU---------------UCGGGU--UUGCUGca--CCGC- -5'
6351 5' -54.5 NC_001847.1 + 116552 0.7 0.763335
Target:  5'- -aGGCGAcguguGCCUggGCGACuuUGGCGc -3'
miRNA:   3'- caCCGCUuu---CGGGuuUGCUGc-ACCGC- -5'
6351 5' -54.5 NC_001847.1 + 116144 0.68 0.860254
Target:  5'- -gGGCGcgcGGCCCGA--GGCGcUGGCGg -3'
miRNA:   3'- caCCGCuu-UCGGGUUugCUGC-ACCGC- -5'
6351 5' -54.5 NC_001847.1 + 115697 0.69 0.818784
Target:  5'- -gGGCGAGAGCCgGcuGCGGCccGUGuGCGc -3'
miRNA:   3'- caCCGCUUUCGGgUu-UGCUG--CAC-CGC- -5'
6351 5' -54.5 NC_001847.1 + 115691 0.66 0.936995
Target:  5'- -cGGCGGAgcggcuGGCCCGGcagcgggcgcGCGGCcuuUGGCGc -3'
miRNA:   3'- caCCGCUU------UCGGGUU----------UGCUGc--ACCGC- -5'
6351 5' -54.5 NC_001847.1 + 114031 0.66 0.921081
Target:  5'- -cGGgGucaucacGCCC-GGCGGCGUGGUGa -3'
miRNA:   3'- caCCgCuuu----CGGGuUUGCUGCACCGC- -5'
6351 5' -54.5 NC_001847.1 + 112104 0.74 0.538285
Target:  5'- -aGGUGGAcuGGCUCGAGCGgcGCGUGGCc -3'
miRNA:   3'- caCCGCUU--UCGGGUUUGC--UGCACCGc -5'
6351 5' -54.5 NC_001847.1 + 111678 0.7 0.782402
Target:  5'- -aGcGCGAuGGCCgAGGCGGCGgacgcGGCGa -3'
miRNA:   3'- caC-CGCUuUCGGgUUUGCUGCa----CCGC- -5'
6351 5' -54.5 NC_001847.1 + 110786 0.68 0.847522
Target:  5'- -aGGCGGacAguacccuaccgaaaaGGCCgCGcGCGGCGUGGCGc -3'
miRNA:   3'- caCCGCU--U---------------UCGG-GUuUGCUGCACCGC- -5'
6351 5' -54.5 NC_001847.1 + 109851 0.74 0.548423
Target:  5'- -cGGCGAGGGCgCC--ACGugGUGcGCGg -3'
miRNA:   3'- caCCGCUUUCG-GGuuUGCugCAC-CGC- -5'
6351 5' -54.5 NC_001847.1 + 108739 0.66 0.921081
Target:  5'- -aGGCGGAugGGCggCGGACGACG-GGCc -3'
miRNA:   3'- caCCGCUU--UCGg-GUUUGCUGCaCCGc -5'
6351 5' -54.5 NC_001847.1 + 108654 0.68 0.841787
Target:  5'- aGUGGCcGGGGCCgCGGACGaguuuccgcuccccGCGcUGGCGa -3'
miRNA:   3'- -CACCGcUUUCGG-GUUUGC--------------UGC-ACCGC- -5'
6351 5' -54.5 NC_001847.1 + 108259 0.66 0.926634
Target:  5'- --uGCGuguuGCCC-GACGGCGgUGGCGg -3'
miRNA:   3'- cacCGCuuu-CGGGuUUGCUGC-ACCGC- -5'
6351 5' -54.5 NC_001847.1 + 107834 0.69 0.809035
Target:  5'- -cGGCGcggagggGAAGCUCGGGCGACc-GGCGg -3'
miRNA:   3'- caCCGC-------UUUCGGGUUUGCUGcaCCGC- -5'
6351 5' -54.5 NC_001847.1 + 106791 0.68 0.852359
Target:  5'- -gGGCGccgGGGGCCCGGGCG-CGcGGCc -3'
miRNA:   3'- caCCGC---UUUCGGGUUUGCuGCaCCGc -5'
6351 5' -54.5 NC_001847.1 + 106690 0.72 0.662314
Target:  5'- -cGGCGgcGGCCCGucgcGCGGCGccgcGGCGu -3'
miRNA:   3'- caCCGCuuUCGGGUu---UGCUGCa---CCGC- -5'
6351 5' -54.5 NC_001847.1 + 106228 0.68 0.835115
Target:  5'- cGUGGCGcucGCCUgcACGGCGUcccaaacGGCGg -3'
miRNA:   3'- -CACCGCuuuCGGGuuUGCUGCA-------CCGC- -5'
6351 5' -54.5 NC_001847.1 + 106098 0.66 0.921081
Target:  5'- -cGGCGAGcacggcgcgcAGCUCGGcgagcGCGGCGcgGGCGc -3'
miRNA:   3'- caCCGCUU----------UCGGGUU-----UGCUGCa-CCGC- -5'
6351 5' -54.5 NC_001847.1 + 105939 0.69 0.827462
Target:  5'- -cGGCcgagagcaccGGGAGCCCGgcggcgccGGCGGCGcGGCGg -3'
miRNA:   3'- caCCG----------CUUUCGGGU--------UUGCUGCaCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.