miRNA display CGI


Results 21 - 40 of 315 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6351 5' -54.5 NC_001847.1 + 129224 0.68 0.865654
Target:  5'- -cGGCGAccgcuaauGGGCCCGggcgcacaaucugcGACGGCGcGGCc -3'
miRNA:   3'- caCCGCU--------UUCGGGU--------------UUGCUGCaCCGc -5'
6351 5' -54.5 NC_001847.1 + 128099 1.08 0.004205
Target:  5'- gGUGGCGAAAGCCCAAACGACGUGGCGc -3'
miRNA:   3'- -CACCGCUUUCGGGUUUGCUGCACCGC- -5'
6351 5' -54.5 NC_001847.1 + 127280 0.66 0.921081
Target:  5'- uGUGGCGGccGCCUcuGCaGGCGccaccGGCGg -3'
miRNA:   3'- -CACCGCUuuCGGGuuUG-CUGCa----CCGC- -5'
6351 5' -54.5 NC_001847.1 + 126238 0.66 0.926634
Target:  5'- -cGGCGggGcGUCCGGGgucguCGGCGgGGCGu -3'
miRNA:   3'- caCCGCuuU-CGGGUUU-----GCUGCaCCGC- -5'
6351 5' -54.5 NC_001847.1 + 126197 0.69 0.79173
Target:  5'- -gGGUGggGGCUgGGugGGCGgagcucacuUGGCGg -3'
miRNA:   3'- caCCGCuuUCGGgUUugCUGC---------ACCGC- -5'
6351 5' -54.5 NC_001847.1 + 125516 0.68 0.875398
Target:  5'- -cGGCG--GGCCgGcGCGGCGgcgGGCGc -3'
miRNA:   3'- caCCGCuuUCGGgUuUGCUGCa--CCGC- -5'
6351 5' -54.5 NC_001847.1 + 125472 0.68 0.835955
Target:  5'- -cGGCGgcAGCUC--GCGGCG-GGCGc -3'
miRNA:   3'- caCCGCuuUCGGGuuUGCUGCaCCGC- -5'
6351 5' -54.5 NC_001847.1 + 125405 0.67 0.909235
Target:  5'- -gGGC-AGGGCCCGccCGgucGCGUGGCa -3'
miRNA:   3'- caCCGcUUUCGGGUuuGC---UGCACCGc -5'
6351 5' -54.5 NC_001847.1 + 125241 0.67 0.909235
Target:  5'- -gGGCG-GGGCCCGAgaccacGCGGuCG-GGCGa -3'
miRNA:   3'- caCCGCuUUCGGGUU------UGCU-GCaCCGC- -5'
6351 5' -54.5 NC_001847.1 + 125002 0.72 0.648797
Target:  5'- -gGGCGAGAGCugcagcagcgccucCCAgcacgcguccGugGGCGUGGCGc -3'
miRNA:   3'- caCCGCUUUCG--------------GGU----------UugCUGCACCGC- -5'
6351 5' -54.5 NC_001847.1 + 124927 0.71 0.727851
Target:  5'- -gGGCGAcagcgggcgcgcccuGGGCCCGgcGGCGGCGgcGGCGc -3'
miRNA:   3'- caCCGCU---------------UUCGGGU--UUGCUGCa-CCGC- -5'
6351 5' -54.5 NC_001847.1 + 124554 0.66 0.936995
Target:  5'- -cGGCGccGGCCCGcGCGcGCGggggGGCc -3'
miRNA:   3'- caCCGCuuUCGGGUuUGC-UGCa---CCGc -5'
6351 5' -54.5 NC_001847.1 + 124478 0.7 0.743786
Target:  5'- -gGGCGAGccCCCcGGCGACGgguaUGGCGa -3'
miRNA:   3'- caCCGCUUucGGGuUUGCUGC----ACCGC- -5'
6351 5' -54.5 NC_001847.1 + 123649 0.69 0.817906
Target:  5'- uUGGCuGAAGGCgccugagCCAGAUG-UGUGGCGg -3'
miRNA:   3'- cACCG-CUUUCG-------GGUUUGCuGCACCGC- -5'
6351 5' -54.5 NC_001847.1 + 122288 0.7 0.782402
Target:  5'- cGUGGUuauuaGGAGCCCAuGCGGCGUaccGGCc -3'
miRNA:   3'- -CACCGc----UUUCGGGUuUGCUGCA---CCGc -5'
6351 5' -54.5 NC_001847.1 + 120933 0.75 0.469436
Target:  5'- -gGGCGGgcGCgCGGGCGugGUGGCu -3'
miRNA:   3'- caCCGCUuuCGgGUUUGCugCACCGc -5'
6351 5' -54.5 NC_001847.1 + 120398 0.68 0.867936
Target:  5'- -cGGCGAgcgcgAGGCCCGGcgcGCGuAUGUGgGCGc -3'
miRNA:   3'- caCCGCU-----UUCGGGUU---UGC-UGCAC-CGC- -5'
6351 5' -54.5 NC_001847.1 + 118475 0.7 0.743786
Target:  5'- -cGGCGcAAGGCCCGGGCGcgccUGUaGGCGc -3'
miRNA:   3'- caCCGC-UUUCGGGUUUGCu---GCA-CCGC- -5'
6351 5' -54.5 NC_001847.1 + 118228 0.66 0.936995
Target:  5'- -cGGCGucuGCgCCGAGCGGCccgGGCu -3'
miRNA:   3'- caCCGCuuuCG-GGUUUGCUGca-CCGc -5'
6351 5' -54.5 NC_001847.1 + 117293 0.66 0.921081
Target:  5'- -cGGCGGcgcuggcaacgcGAGCCgCGAugggcgaccuaGCGGCGgggGGCGg -3'
miRNA:   3'- caCCGCU------------UUCGG-GUU-----------UGCUGCa--CCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.