miRNA display CGI


Results 21 - 40 of 315 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6351 5' -54.5 NC_001847.1 + 10129 0.66 0.914688
Target:  5'- -cGGCGAGcgGGCCCGGccguagcGCGAgCGggagGGCu -3'
miRNA:   3'- caCCGCUU--UCGGGUU-------UGCU-GCa---CCGc -5'
6351 5' -54.5 NC_001847.1 + 88638 0.66 0.933991
Target:  5'- cGUGcGCGAGAGCCUgcucagcgugcuguuGcGCGAC-UGGCu -3'
miRNA:   3'- -CAC-CGCUUUCGGG---------------UuUGCUGcACCGc -5'
6351 5' -54.5 NC_001847.1 + 95918 0.66 0.941806
Target:  5'- gGUGGUGGaacgagcucuGAGCCCG-GCGccggaACGcUGGCGg -3'
miRNA:   3'- -CACCGCU----------UUCGGGUuUGC-----UGC-ACCGC- -5'
6351 5' -54.5 NC_001847.1 + 72705 0.66 0.941806
Target:  5'- -aGaGCGGccGCCCGGugGGCGgcagcaGGCa -3'
miRNA:   3'- caC-CGCUuuCGGGUUugCUGCa-----CCGc -5'
6351 5' -54.5 NC_001847.1 + 29623 0.66 0.941806
Target:  5'- gGUGGaggacaUGAGGGCCgGGGCGcCGcgGGCGg -3'
miRNA:   3'- -CACC------GCUUUCGGgUUUGCuGCa-CCGC- -5'
6351 5' -54.5 NC_001847.1 + 118228 0.66 0.936995
Target:  5'- -cGGCGucuGCgCCGAGCGGCccgGGCu -3'
miRNA:   3'- caCCGCuuuCG-GGUUUGCUGca-CCGc -5'
6351 5' -54.5 NC_001847.1 + 74115 0.66 0.936995
Target:  5'- -gGGCGGccgcGCCCGGggaugugacgcGCGGCGccgaUGGCGg -3'
miRNA:   3'- caCCGCUuu--CGGGUU-----------UGCUGC----ACCGC- -5'
6351 5' -54.5 NC_001847.1 + 31311 0.66 0.936995
Target:  5'- -cGGCGc--GCCgCGGGCGGCGgccUGGUGg -3'
miRNA:   3'- caCCGCuuuCGG-GUUUGCUGC---ACCGC- -5'
6351 5' -54.5 NC_001847.1 + 1263 0.66 0.936995
Target:  5'- -cGGCGcgccGAGCCCccagcgguuGGCGGCGcGGUGg -3'
miRNA:   3'- caCCGCu---UUCGGGu--------UUGCUGCaCCGC- -5'
6351 5' -54.5 NC_001847.1 + 130187 0.66 0.936995
Target:  5'- -gGGCGcccGGCCUGAAgaGACG-GGCGg -3'
miRNA:   3'- caCCGCuu-UCGGGUUUg-CUGCaCCGC- -5'
6351 5' -54.5 NC_001847.1 + 21741 0.66 0.936995
Target:  5'- -cGGCGccGGCCCGcGCGcGCGggggGGCc -3'
miRNA:   3'- caCCGCuuUCGGGUuUGC-UGCa---CCGc -5'
6351 5' -54.5 NC_001847.1 + 95633 0.66 0.941806
Target:  5'- uGUGGCGGGccGCUCuGGCG-CGgggGGCGg -3'
miRNA:   3'- -CACCGCUUu-CGGGuUUGCuGCa--CCGC- -5'
6351 5' -54.5 NC_001847.1 + 46095 0.66 0.933991
Target:  5'- -aGGCGcccGGCCCGcuuccgcgggggcugGGCGAUGUcGGCa -3'
miRNA:   3'- caCCGCuu-UCGGGU---------------UUGCUGCA-CCGc -5'
6351 5' -54.5 NC_001847.1 + 97862 0.66 0.931938
Target:  5'- -cGGgGAAaggcGGCCCGcgucccagucGGCGGCGcggaUGGCGa -3'
miRNA:   3'- caCCgCUU----UCGGGU----------UUGCUGC----ACCGC- -5'
6351 5' -54.5 NC_001847.1 + 78026 0.66 0.931938
Target:  5'- aUGGCGucc-CCCAAcaugcgcgcgGCGGCGcGGCGg -3'
miRNA:   3'- cACCGCuuucGGGUU----------UGCUGCaCCGC- -5'
6351 5' -54.5 NC_001847.1 + 74774 0.66 0.931938
Target:  5'- -gGGCGGGuaccuuGCCCucuACGGCaugGGCGa -3'
miRNA:   3'- caCCGCUUu-----CGGGuu-UGCUGca-CCGC- -5'
6351 5' -54.5 NC_001847.1 + 29097 0.66 0.931938
Target:  5'- -cGGCGAGcacGGCgCGGGCGGCGc-GCGa -3'
miRNA:   3'- caCCGCUU---UCGgGUUUGCUGCacCGC- -5'
6351 5' -54.5 NC_001847.1 + 32842 0.66 0.931419
Target:  5'- -gGGCGAGgacuacgacgccgGGCCCAucgaccucACGGCGgccgacGGCGa -3'
miRNA:   3'- caCCGCUU-------------UCGGGUu-------UGCUGCa-----CCGC- -5'
6351 5' -54.5 NC_001847.1 + 5446 0.66 0.926634
Target:  5'- --uGCGuguuGCCC-GACGGCGgUGGCGg -3'
miRNA:   3'- cacCGCuuu-CGGGuUUGCUGC-ACCGC- -5'
6351 5' -54.5 NC_001847.1 + 74440 0.66 0.926634
Target:  5'- cGUGGCG---GCgCAcGACGcCGUGGCGc -3'
miRNA:   3'- -CACCGCuuuCGgGU-UUGCuGCACCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.