miRNA display CGI


Results 41 - 60 of 315 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6351 5' -54.5 NC_001847.1 + 74115 0.66 0.936995
Target:  5'- -gGGCGGccgcGCCCGGggaugugacgcGCGGCGccgaUGGCGg -3'
miRNA:   3'- caCCGCUuu--CGGGUU-----------UGCUGC----ACCGC- -5'
6351 5' -54.5 NC_001847.1 + 118228 0.66 0.936995
Target:  5'- -cGGCGucuGCgCCGAGCGGCccgGGCu -3'
miRNA:   3'- caCCGCuuuCG-GGUUUGCUGca-CCGc -5'
6351 5' -54.5 NC_001847.1 + 29623 0.66 0.941806
Target:  5'- gGUGGaggacaUGAGGGCCgGGGCGcCGcgGGCGg -3'
miRNA:   3'- -CACC------GCUUUCGGgUUUGCuGCa-CCGC- -5'
6351 5' -54.5 NC_001847.1 + 72705 0.66 0.941806
Target:  5'- -aGaGCGGccGCCCGGugGGCGgcagcaGGCa -3'
miRNA:   3'- caC-CGCUuuCGGGUUugCUGCa-----CCGc -5'
6351 5' -54.5 NC_001847.1 + 95918 0.66 0.941806
Target:  5'- gGUGGUGGaacgagcucuGAGCCCG-GCGccggaACGcUGGCGg -3'
miRNA:   3'- -CACCGCU----------UUCGGGUuUGC-----UGC-ACCGC- -5'
6351 5' -54.5 NC_001847.1 + 74774 0.66 0.931938
Target:  5'- -gGGCGGGuaccuuGCCCucuACGGCaugGGCGa -3'
miRNA:   3'- caCCGCUUu-----CGGGuu-UGCUGca-CCGC- -5'
6351 5' -54.5 NC_001847.1 + 29097 0.66 0.931938
Target:  5'- -cGGCGAGcacGGCgCGGGCGGCGc-GCGa -3'
miRNA:   3'- caCCGCUU---UCGgGUUUGCUGCacCGC- -5'
6351 5' -54.5 NC_001847.1 + 114031 0.66 0.921081
Target:  5'- -cGGgGucaucacGCCC-GGCGGCGUGGUGa -3'
miRNA:   3'- caCCgCuuu----CGGGuUUGCUGCACCGC- -5'
6351 5' -54.5 NC_001847.1 + 127280 0.66 0.921081
Target:  5'- uGUGGCGGccGCCUcuGCaGGCGccaccGGCGg -3'
miRNA:   3'- -CACCGCUuuCGGGuuUG-CUGCa----CCGC- -5'
6351 5' -54.5 NC_001847.1 + 132264 0.66 0.921081
Target:  5'- -cGGCGAcgcacccGGCCCGacGACGACGcccGCGa -3'
miRNA:   3'- caCCGCUu------UCGGGU--UUGCUGCac-CGC- -5'
6351 5' -54.5 NC_001847.1 + 3285 0.66 0.921081
Target:  5'- -cGGCGAGcacggcgcgcAGCUCGGcgagcGCGGCGcgGGCGc -3'
miRNA:   3'- caCCGCUU----------UCGGGUU-----UGCUGCa-CCGC- -5'
6351 5' -54.5 NC_001847.1 + 73744 0.66 0.921081
Target:  5'- --cGCGAGGGCaguuCCAAGCGcCG-GGCGg -3'
miRNA:   3'- cacCGCUUUCG----GGUUUGCuGCaCCGC- -5'
6351 5' -54.5 NC_001847.1 + 98767 0.66 0.921081
Target:  5'- -cGGCGcgcgcuGCCCGggccgcggcGGCGccGCGUGGCGc -3'
miRNA:   3'- caCCGCuuu---CGGGU---------UUGC--UGCACCGC- -5'
6351 5' -54.5 NC_001847.1 + 117293 0.66 0.921081
Target:  5'- -cGGCGGcgcuggcaacgcGAGCCgCGAugggcgaccuaGCGGCGgggGGCGg -3'
miRNA:   3'- caCCGCU------------UUCGG-GUU-----------UGCUGCa--CCGC- -5'
6351 5' -54.5 NC_001847.1 + 23425 0.66 0.926634
Target:  5'- -cGGCGggGcGUCCGGGgucguCGGCGgGGCGu -3'
miRNA:   3'- caCCGCuuU-CGGGUUU-----GCUGCaCCGC- -5'
6351 5' -54.5 NC_001847.1 + 66621 0.66 0.926634
Target:  5'- -cGGCGAGGacgauCCC-GACGGCGggGGCGc -3'
miRNA:   3'- caCCGCUUUc----GGGuUUGCUGCa-CCGC- -5'
6351 5' -54.5 NC_001847.1 + 68836 0.66 0.926634
Target:  5'- -gGGCGccgcgaAGAGCUCGGGCG-CGaGGCGg -3'
miRNA:   3'- caCCGC------UUUCGGGUUUGCuGCaCCGC- -5'
6351 5' -54.5 NC_001847.1 + 74440 0.66 0.926634
Target:  5'- cGUGGCG---GCgCAcGACGcCGUGGCGc -3'
miRNA:   3'- -CACCGCuuuCGgGU-UUGCuGCACCGC- -5'
6351 5' -54.5 NC_001847.1 + 5446 0.66 0.926634
Target:  5'- --uGCGuguuGCCC-GACGGCGgUGGCGg -3'
miRNA:   3'- cacCGCuuu-CGGGuUUGCUGC-ACCGC- -5'
6351 5' -54.5 NC_001847.1 + 32842 0.66 0.931419
Target:  5'- -gGGCGAGgacuacgacgccgGGCCCAucgaccucACGGCGgccgacGGCGa -3'
miRNA:   3'- caCCGCUU-------------UCGGGUu-------UGCUGCa-----CCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.