Results 41 - 60 of 315 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6351 | 5' | -54.5 | NC_001847.1 | + | 135131 | 0.71 | 0.683019 |
Target: 5'- -gGGUcgcaGggGGCCCGcGCGGCGcGGCGc -3' miRNA: 3'- caCCG----CuuUCGGGUuUGCUGCaCCGC- -5' |
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6351 | 5' | -54.5 | NC_001847.1 | + | 77926 | 0.74 | 0.528212 |
Target: 5'- -cGGCGAcGAGCCCcGGCGGCcggGGCGu -3' miRNA: 3'- caCCGCU-UUCGGGuUUGCUGca-CCGC- -5' |
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6351 | 5' | -54.5 | NC_001847.1 | + | 27734 | 0.76 | 0.432165 |
Target: 5'- -cGGCGGAAGCCgcGGCGGCGguugcGGCGg -3' miRNA: 3'- caCCGCUUUCGGguUUGCUGCa----CCGC- -5' |
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6351 | 5' | -54.5 | NC_001847.1 | + | 105090 | 0.71 | 0.683019 |
Target: 5'- -cGGCGGAAGCCgCcgucGGCGGCGgggccgccgGGCGg -3' miRNA: 3'- caCCGCUUUCGG-Gu---UUGCUGCa--------CCGC- -5' |
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6351 | 5' | -54.5 | NC_001847.1 | + | 80909 | 0.76 | 0.423119 |
Target: 5'- cGUGGCc---GCCCAAGCGGCcGUGGCc -3' miRNA: 3'- -CACCGcuuuCGGGUUUGCUG-CACCGc -5' |
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6351 | 5' | -54.5 | NC_001847.1 | + | 134170 | 0.69 | 0.80993 |
Target: 5'- -cGGCGGAAGCCCcgcCGGCccgGGUGc -3' miRNA: 3'- caCCGCUUUCGGGuuuGCUGca-CCGC- -5' |
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6351 | 5' | -54.5 | NC_001847.1 | + | 37322 | 0.75 | 0.45902 |
Target: 5'- uGUGGCGGcacgcGCCCGAcgcggccacgcgcGCGAcCGUGGCGg -3' miRNA: 3'- -CACCGCUuu---CGGGUU-------------UGCU-GCACCGC- -5' |
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6351 | 5' | -54.5 | NC_001847.1 | + | 103573 | 0.69 | 0.800909 |
Target: 5'- -gGGCGAGgccGGCCCGccgccGGCGGCGccGGCc -3' miRNA: 3'- caCCGCUU---UCGGGU-----UUGCUGCa-CCGc -5' |
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6351 | 5' | -54.5 | NC_001847.1 | + | 65738 | 0.69 | 0.79173 |
Target: 5'- -gGGCGGc-GCUCGAgaGCGugGUGGCc -3' miRNA: 3'- caCCGCUuuCGGGUU--UGCugCACCGc -5' |
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6351 | 5' | -54.5 | NC_001847.1 | + | 132327 | 0.7 | 0.763335 |
Target: 5'- -cGGCGGAGGUgCCGGcGCGGC-UGGCGg -3' miRNA: 3'- caCCGCUUUCG-GGUU-UGCUGcACCGC- -5' |
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6351 | 5' | -54.5 | NC_001847.1 | + | 124478 | 0.7 | 0.743786 |
Target: 5'- -gGGCGAGccCCCcGGCGACGgguaUGGCGa -3' miRNA: 3'- caCCGCUUucGGGuUUGCUGC----ACCGC- -5' |
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6351 | 5' | -54.5 | NC_001847.1 | + | 124927 | 0.71 | 0.727851 |
Target: 5'- -gGGCGAcagcgggcgcgcccuGGGCCCGgcGGCGGCGgcGGCGc -3' miRNA: 3'- caCCGCU---------------UUCGGGU--UUGCUGCa-CCGC- -5' |
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6351 | 5' | -54.5 | NC_001847.1 | + | 82792 | 0.71 | 0.693311 |
Target: 5'- aUGGaCGAGuuucuGGCCgAGGCGGCG-GGCGa -3' miRNA: 3'- cACC-GCUU-----UCGGgUUUGCUGCaCCGC- -5' |
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6351 | 5' | -54.5 | NC_001847.1 | + | 106690 | 0.72 | 0.662314 |
Target: 5'- -cGGCGgcGGCCCGucgcGCGGCGccgcGGCGu -3' miRNA: 3'- caCCGCuuUCGGGUu---UGCUGCa---CCGC- -5' |
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6351 | 5' | -54.5 | NC_001847.1 | + | 77424 | 0.72 | 0.651919 |
Target: 5'- -gGGCGAGGGCUUcguCGuCGUGGCGu -3' miRNA: 3'- caCCGCUUUCGGGuuuGCuGCACCGC- -5' |
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6351 | 5' | -54.5 | NC_001847.1 | + | 59923 | 0.73 | 0.604024 |
Target: 5'- -cGGCGAGAGCCggcggaaGGGCGccacgcaagcguccgGCGUGGCGu -3' miRNA: 3'- caCCGCUUUCGGg------UUUGC---------------UGCACCGC- -5' |
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6351 | 5' | -54.5 | NC_001847.1 | + | 28216 | 0.74 | 0.548423 |
Target: 5'- -cGGCGuucGGCCCGGugaacaugcagcGCGugGUGGUGg -3' miRNA: 3'- caCCGCuu-UCGGGUU------------UGCugCACCGC- -5' |
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6351 | 5' | -54.5 | NC_001847.1 | + | 33498 | 0.75 | 0.498438 |
Target: 5'- -cGGCGgcGGCgCGGGCGGCGgcgGGCGc -3' miRNA: 3'- caCCGCuuUCGgGUUUGCUGCa--CCGC- -5' |
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6351 | 5' | -54.5 | NC_001847.1 | + | 5275 | 0.75 | 0.496479 |
Target: 5'- -aGGCGAAAGUCCAcguccagGACGAUGUugguuacGGCGa -3' miRNA: 3'- caCCGCUUUCGGGU-------UUGCUGCA-------CCGC- -5' |
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6351 | 5' | -54.5 | NC_001847.1 | + | 20521 | 0.75 | 0.47901 |
Target: 5'- -gGGCGggGGCCCAcuggAAgGACGUgaacuucucGGCGg -3' miRNA: 3'- caCCGCuuUCGGGU----UUgCUGCA---------CCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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