miRNA display CGI


Results 41 - 60 of 315 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6351 5' -54.5 NC_001847.1 + 30385 0.75 0.469436
Target:  5'- cUGGUGcgGGCgCAGACGGCGcUGGCGc -3'
miRNA:   3'- cACCGCuuUCGgGUUUGCUGC-ACCGC- -5'
6351 5' -54.5 NC_001847.1 + 19196 0.71 0.733854
Target:  5'- -gGGCGGGgucuguGGCCCAGACGGCGaGuGCc -3'
miRNA:   3'- caCCGCUU------UCGGGUUUGCUGCaC-CGc -5'
6351 5' -54.5 NC_001847.1 + 56867 0.69 0.813492
Target:  5'- -cGGCGGcccgggcgcggccacGGGCCCGccGGCGACGgcgacgccGGCGg -3'
miRNA:   3'- caCCGCU---------------UUCGGGU--UUGCUGCa-------CCGC- -5'
6351 5' -54.5 NC_001847.1 + 101082 0.69 0.800909
Target:  5'- --cGCGggGGCCgGGuCGGCGgGGCGg -3'
miRNA:   3'- cacCGCuuUCGGgUUuGCUGCaCCGC- -5'
6351 5' -54.5 NC_001847.1 + 65824 0.71 0.713727
Target:  5'- -cGGCuGcuGGCCC--ACGGCGUGGUGu -3'
miRNA:   3'- caCCG-CuuUCGGGuuUGCUGCACCGC- -5'
6351 5' -54.5 NC_001847.1 + 59576 0.75 0.498438
Target:  5'- -cGGCGGAAGCUCuGGCuGGCGUGcGCGu -3'
miRNA:   3'- caCCGCUUUCGGGuUUG-CUGCAC-CGC- -5'
6351 5' -54.5 NC_001847.1 + 27529 0.75 0.459961
Target:  5'- -cGGCGggGacGCCCGAgaacgGCGGCGcGGCGg -3'
miRNA:   3'- caCCGCuuU--CGGGUU-----UGCUGCaCCGC- -5'
6351 5' -54.5 NC_001847.1 + 37322 0.75 0.45902
Target:  5'- uGUGGCGGcacgcGCCCGAcgcggccacgcgcGCGAcCGUGGCGg -3'
miRNA:   3'- -CACCGCUuu---CGGGUU-------------UGCU-GCACCGC- -5'
6351 5' -54.5 NC_001847.1 + 30933 0.73 0.599869
Target:  5'- -cGGCGGAGGCCUucgcauAAACGGCGcUGcGCGc -3'
miRNA:   3'- caCCGCUUUCGGG------UUUGCUGC-AC-CGC- -5'
6351 5' -54.5 NC_001847.1 + 134800 0.72 0.662314
Target:  5'- -gGGCGcGAAGCCCGGGaggGACGcgGGCGu -3'
miRNA:   3'- caCCGC-UUUCGGGUUUg--CUGCa-CCGC- -5'
6351 5' -54.5 NC_001847.1 + 83249 0.72 0.651919
Target:  5'- -gGGCGgcGGCCgAAagcGCGGCGggGGCGg -3'
miRNA:   3'- caCCGCuuUCGGgUU---UGCUGCa-CCGC- -5'
6351 5' -54.5 NC_001847.1 + 28216 0.74 0.548423
Target:  5'- -cGGCGuucGGCCCGGugaacaugcagcGCGugGUGGUGg -3'
miRNA:   3'- caCCGCuu-UCGGGUU------------UGCugCACCGC- -5'
6351 5' -54.5 NC_001847.1 + 104244 0.75 0.488679
Target:  5'- gGUGcGCG--GGCCCAGGCG-CGUGGCc -3'
miRNA:   3'- -CAC-CGCuuUCGGGUUUGCuGCACCGc -5'
6351 5' -54.5 NC_001847.1 + 53836 0.7 0.772933
Target:  5'- cUGGCGgcGGCagcGGCGGCGcUGGCGg -3'
miRNA:   3'- cACCGCuuUCGgguUUGCUGC-ACCGC- -5'
6351 5' -54.5 NC_001847.1 + 116552 0.7 0.763335
Target:  5'- -aGGCGAcguguGCCUggGCGACuuUGGCGc -3'
miRNA:   3'- caCCGCUuu---CGGGuuUGCUGc-ACCGC- -5'
6351 5' -54.5 NC_001847.1 + 82792 0.71 0.693311
Target:  5'- aUGGaCGAGuuucuGGCCgAGGCGGCG-GGCGa -3'
miRNA:   3'- cACC-GCUU-----UCGGgUUUGCUGCaCCGC- -5'
6351 5' -54.5 NC_001847.1 + 94230 0.69 0.800909
Target:  5'- -cGGCGggGcGCCCGcGCGGCGccgugGaGCGg -3'
miRNA:   3'- caCCGCuuU-CGGGUuUGCUGCa----C-CGC- -5'
6351 5' -54.5 NC_001847.1 + 85430 0.66 0.941806
Target:  5'- -cGGCGAAugauuauagcGGCC---GCGACGUcaaaGGCGg -3'
miRNA:   3'- caCCGCUU----------UCGGguuUGCUGCA----CCGC- -5'
6351 5' -54.5 NC_001847.1 + 33690 0.69 0.818784
Target:  5'- -aGGCGcAGGCgCucGCGGCGcGGCGg -3'
miRNA:   3'- caCCGCuUUCGgGuuUGCUGCaCCGC- -5'
6351 5' -54.5 NC_001847.1 + 65738 0.69 0.79173
Target:  5'- -gGGCGGc-GCUCGAgaGCGugGUGGCc -3'
miRNA:   3'- caCCGCUuuCGGGUU--UGCugCACCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.