miRNA display CGI


Results 61 - 80 of 315 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6351 5' -54.5 NC_001847.1 + 82792 0.71 0.693311
Target:  5'- aUGGaCGAGuuucuGGCCgAGGCGGCG-GGCGa -3'
miRNA:   3'- cACC-GCUU-----UCGGgUUUGCUGCaCCGC- -5'
6351 5' -54.5 NC_001847.1 + 43118 0.71 0.733854
Target:  5'- -cGGCGGu-GCCCGcaGACGGCGcgGGCc -3'
miRNA:   3'- caCCGCUuuCGGGU--UUGCUGCa-CCGc -5'
6351 5' -54.5 NC_001847.1 + 27529 0.75 0.459961
Target:  5'- -cGGCGggGacGCCCGAgaacgGCGGCGcGGCGg -3'
miRNA:   3'- caCCGCuuU--CGGGUU-----UGCUGCaCCGC- -5'
6351 5' -54.5 NC_001847.1 + 52047 0.75 0.47901
Target:  5'- -aGGCGGAGGCCCGcccggagguGugGGCG-GGCa -3'
miRNA:   3'- caCCGCUUUCGGGU---------UugCUGCaCCGc -5'
6351 5' -54.5 NC_001847.1 + 29647 0.75 0.497458
Target:  5'- gGUGGCugcGGAcgcgcugcccuucAGCgCAAACGGCGUGGCGc -3'
miRNA:   3'- -CACCG---CUU-------------UCGgGUUUGCUGCACCGC- -5'
6351 5' -54.5 NC_001847.1 + 59576 0.75 0.498438
Target:  5'- -cGGCGGAAGCUCuGGCuGGCGUGcGCGu -3'
miRNA:   3'- caCCGCUUUCGGGuUUG-CUGCAC-CGC- -5'
6351 5' -54.5 NC_001847.1 + 37223 0.74 0.548423
Target:  5'- uUGGCGgcGGCgCGGACGACccGGCGg -3'
miRNA:   3'- cACCGCuuUCGgGUUUGCUGcaCCGC- -5'
6351 5' -54.5 NC_001847.1 + 54525 0.73 0.610261
Target:  5'- gGUGGggcggggccgucCGggGGCgCAGACGGCGggGGCGg -3'
miRNA:   3'- -CACC------------GCuuUCGgGUUUGCUGCa-CCGC- -5'
6351 5' -54.5 NC_001847.1 + 15785 0.72 0.651919
Target:  5'- -cGGCGGcAAGCgCCGcGCGGCGggaGGCGg -3'
miRNA:   3'- caCCGCU-UUCG-GGUuUGCUGCa--CCGC- -5'
6351 5' -54.5 NC_001847.1 + 134800 0.72 0.662314
Target:  5'- -gGGCGcGAAGCCCGGGaggGACGcgGGCGu -3'
miRNA:   3'- caCCGC-UUUCGGGUUUg--CUGCa-CCGC- -5'
6351 5' -54.5 NC_001847.1 + 97724 0.68 0.852359
Target:  5'- -cGGCGggGGCagaagcggAAGCGGCGgcGGCGg -3'
miRNA:   3'- caCCGCuuUCGgg------UUUGCUGCa-CCGC- -5'
6351 5' -54.5 NC_001847.1 + 65006 0.68 0.844257
Target:  5'- cUGuGCGAGcggaccgcaagcGGCgCGAGCGccACGUGGCGg -3'
miRNA:   3'- cAC-CGCUU------------UCGgGUUUGC--UGCACCGC- -5'
6351 5' -54.5 NC_001847.1 + 116552 0.7 0.763335
Target:  5'- -aGGCGAcguguGCCUggGCGACuuUGGCGc -3'
miRNA:   3'- caCCGCUuu---CGGGuuUGCUGc-ACCGC- -5'
6351 5' -54.5 NC_001847.1 + 66335 0.7 0.772933
Target:  5'- -cGGCGGgugGGGCgCGGGCGccgcCGUGGCGa -3'
miRNA:   3'- caCCGCU---UUCGgGUUUGCu---GCACCGC- -5'
6351 5' -54.5 NC_001847.1 + 103573 0.69 0.800909
Target:  5'- -gGGCGAGgccGGCCCGccgccGGCGGCGccGGCc -3'
miRNA:   3'- caCCGCUU---UCGGGU-----UUGCUGCa-CCGc -5'
6351 5' -54.5 NC_001847.1 + 134170 0.69 0.80993
Target:  5'- -cGGCGGAAGCCCcgcCGGCccgGGUGc -3'
miRNA:   3'- caCCGCUUUCGGGuuuGCUGca-CCGC- -5'
6351 5' -54.5 NC_001847.1 + 34589 0.69 0.818784
Target:  5'- --uGCGcAAGGCCCGGGCGcugGCGcGGCGg -3'
miRNA:   3'- cacCGC-UUUCGGGUUUGC---UGCaCCGC- -5'
6351 5' -54.5 NC_001847.1 + 4541 0.69 0.818784
Target:  5'- -cGGCGGccGCCCgcGggUGGCGcGGCGu -3'
miRNA:   3'- caCCGCUuuCGGG--UuuGCUGCaCCGC- -5'
6351 5' -54.5 NC_001847.1 + 131007 0.69 0.827462
Target:  5'- --aGCGAugccGGGCCCGagGACGAUGggGGCGa -3'
miRNA:   3'- cacCGCU----UUCGGGU--UUGCUGCa-CCGC- -5'
6351 5' -54.5 NC_001847.1 + 85215 0.68 0.843436
Target:  5'- -cGGCGGugcaaaaGAGCCCGAcgaaGGCGgccGGCGg -3'
miRNA:   3'- caCCGCU-------UUCGGGUUug--CUGCa--CCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.