miRNA display CGI


Results 61 - 80 of 315 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6351 5' -54.5 NC_001847.1 + 101082 0.69 0.800909
Target:  5'- --cGCGggGGCCgGGuCGGCGgGGCGg -3'
miRNA:   3'- cacCGCuuUCGGgUUuGCUGCaCCGC- -5'
6351 5' -54.5 NC_001847.1 + 33498 0.75 0.498438
Target:  5'- -cGGCGgcGGCgCGGGCGGCGgcgGGCGc -3'
miRNA:   3'- caCCGCuuUCGgGUUUGCUGCa--CCGC- -5'
6351 5' -54.5 NC_001847.1 + 15525 0.71 0.713727
Target:  5'- -cGGCGGGAGCCgCGGGCuGC-UGGCGc -3'
miRNA:   3'- caCCGCUUUCGG-GUUUGcUGcACCGC- -5'
6351 5' -54.5 NC_001847.1 + 43118 0.71 0.733854
Target:  5'- -cGGCGGu-GCCCGcaGACGGCGcgGGCc -3'
miRNA:   3'- caCCGCUuuCGGGU--UUGCUGCa-CCGc -5'
6351 5' -54.5 NC_001847.1 + 124478 0.7 0.743786
Target:  5'- -gGGCGAGccCCCcGGCGACGgguaUGGCGa -3'
miRNA:   3'- caCCGCUUucGGGuUUGCUGC----ACCGC- -5'
6351 5' -54.5 NC_001847.1 + 12493 0.75 0.492572
Target:  5'- -cGGCGggGGCggccaagaacccgggCCAGACGACGaaGGCGa -3'
miRNA:   3'- caCCGCuuUCG---------------GGUUUGCUGCa-CCGC- -5'
6351 5' -54.5 NC_001847.1 + 37223 0.74 0.548423
Target:  5'- uUGGCGgcGGCgCGGACGACccGGCGg -3'
miRNA:   3'- cACCGCuuUCGgGUUUGCUGcaCCGC- -5'
6351 5' -54.5 NC_001847.1 + 106690 0.72 0.662314
Target:  5'- -cGGCGgcGGCCCGucgcGCGGCGccgcGGCGu -3'
miRNA:   3'- caCCGCuuUCGGGUu---UGCUGCa---CCGC- -5'
6351 5' -54.5 NC_001847.1 + 100974 0.72 0.672684
Target:  5'- -cGGCGccGAGCuCCGAGCGACGgaaGGUGc -3'
miRNA:   3'- caCCGCu-UUCG-GGUUUGCUGCa--CCGC- -5'
6351 5' -54.5 NC_001847.1 + 59923 0.73 0.604024
Target:  5'- -cGGCGAGAGCCggcggaaGGGCGccacgcaagcguccgGCGUGGCGu -3'
miRNA:   3'- caCCGCUUUCGGg------UUUGC---------------UGCACCGC- -5'
6351 5' -54.5 NC_001847.1 + 27529 0.75 0.459961
Target:  5'- -cGGCGggGacGCCCGAgaacgGCGGCGcGGCGg -3'
miRNA:   3'- caCCGCuuU--CGGGUU-----UGCUGCaCCGC- -5'
6351 5' -54.5 NC_001847.1 + 30385 0.75 0.469436
Target:  5'- cUGGUGcgGGCgCAGACGGCGcUGGCGc -3'
miRNA:   3'- cACCGCuuUCGgGUUUGCUGC-ACCGC- -5'
6351 5' -54.5 NC_001847.1 + 56867 0.69 0.813492
Target:  5'- -cGGCGGcccgggcgcggccacGGGCCCGccGGCGACGgcgacgccGGCGg -3'
miRNA:   3'- caCCGCU---------------UUCGGGU--UUGCUGCa-------CCGC- -5'
6351 5' -54.5 NC_001847.1 + 131007 0.69 0.827462
Target:  5'- --aGCGAugccGGGCCCGagGACGAUGggGGCGa -3'
miRNA:   3'- cacCGCU----UUCGGGU--UUGCUGCa-CCGC- -5'
6351 5' -54.5 NC_001847.1 + 133197 0.68 0.849143
Target:  5'- -cGGCGAGgacgagcgccggcGGCCCGAguggccgccgcgccGCGGCG-GGCu -3'
miRNA:   3'- caCCGCUU-------------UCGGGUU--------------UGCUGCaCCGc -5'
6351 5' -54.5 NC_001847.1 + 106791 0.68 0.852359
Target:  5'- -gGGCGccgGGGGCCCGGGCG-CGcGGCc -3'
miRNA:   3'- caCCGC---UUUCGGGUUUGCuGCaCCGc -5'
6351 5' -54.5 NC_001847.1 + 10943 0.68 0.843436
Target:  5'- cUGGCGcggcuGGCCUuuGCGcauauguACGUGGCGc -3'
miRNA:   3'- cACCGCuu---UCGGGuuUGC-------UGCACCGC- -5'
6351 5' -54.5 NC_001847.1 + 103573 0.69 0.800909
Target:  5'- -gGGCGAGgccGGCCCGccgccGGCGGCGccGGCc -3'
miRNA:   3'- caCCGCUU---UCGGGU-----UUGCUGCa-CCGc -5'
6351 5' -54.5 NC_001847.1 + 95286 0.69 0.818784
Target:  5'- cGUGGaCG-AAGCCUAccGGCGGC-UGGCGc -3'
miRNA:   3'- -CACC-GCuUUCGGGU--UUGCUGcACCGC- -5'
6351 5' -54.5 NC_001847.1 + 3819 0.69 0.827462
Target:  5'- -gGGCGucGGCC---GCGAgCGUGGCGu -3'
miRNA:   3'- caCCGCuuUCGGguuUGCU-GCACCGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.