miRNA display CGI


Results 41 - 60 of 315 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6351 5' -54.5 NC_001847.1 + 42732 0.73 0.579166
Target:  5'- -gGGCGGccGCgCGGGCGGCGgGGCGg -3'
miRNA:   3'- caCCGCUuuCGgGUUUGCUGCaCCGC- -5'
6351 5' -54.5 NC_001847.1 + 30933 0.73 0.599869
Target:  5'- -cGGCGGAGGCCUucgcauAAACGGCGcUGcGCGc -3'
miRNA:   3'- caCCGCUUUCGGG------UUUGCUGC-AC-CGC- -5'
6351 5' -54.5 NC_001847.1 + 59923 0.73 0.604024
Target:  5'- -cGGCGAGAGCCggcggaaGGGCGccacgcaagcguccgGCGUGGCGu -3'
miRNA:   3'- caCCGCUUUCGGg------UUUGC---------------UGCACCGC- -5'
6351 5' -54.5 NC_001847.1 + 54525 0.73 0.610261
Target:  5'- gGUGGggcggggccgucCGggGGCgCAGACGGCGggGGCGg -3'
miRNA:   3'- -CACC------------GCuuUCGgGUUUGCUGCa-CCGC- -5'
6351 5' -54.5 NC_001847.1 + 17643 0.73 0.610261
Target:  5'- uUGGU--AAGCCCAgccgacgucGACGACGUcGGCGg -3'
miRNA:   3'- cACCGcuUUCGGGU---------UUGCUGCA-CCGC- -5'
6351 5' -54.5 NC_001847.1 + 51402 0.73 0.610261
Target:  5'- cGUGGCGAGuccaauagcGCCCGAgugaGCGGCG-GGCu -3'
miRNA:   3'- -CACCGCUUu--------CGGGUU----UGCUGCaCCGc -5'
6351 5' -54.5 NC_001847.1 + 37496 0.73 0.610261
Target:  5'- -cGGCGGgucuGGGCCCAAACcccgacuGCGUGGCc -3'
miRNA:   3'- caCCGCU----UUCGGGUUUGc------UGCACCGc -5'
6351 5' -54.5 NC_001847.1 + 43239 0.72 0.641508
Target:  5'- -cGGUGggGGCgCgCGGGCGGCGcGGCGc -3'
miRNA:   3'- caCCGCuuUCG-G-GUUUGCUGCaCCGC- -5'
6351 5' -54.5 NC_001847.1 + 125002 0.72 0.648797
Target:  5'- -gGGCGAGAGCugcagcagcgccucCCAgcacgcguccGugGGCGUGGCGc -3'
miRNA:   3'- caCCGCUUUCG--------------GGU----------UugCUGCACCGC- -5'
6351 5' -54.5 NC_001847.1 + 22189 0.72 0.648797
Target:  5'- -gGGCGAGAGCugcagcagcgccucCCAgcacgcguccGugGGCGUGGCGc -3'
miRNA:   3'- caCCGCUUUCG--------------GGU----------UugCUGCACCGC- -5'
6351 5' -54.5 NC_001847.1 + 103016 0.72 0.651919
Target:  5'- -cGGCGGc-GCCCAGcgccgGCGGCG-GGCGg -3'
miRNA:   3'- caCCGCUuuCGGGUU-----UGCUGCaCCGC- -5'
6351 5' -54.5 NC_001847.1 + 83249 0.72 0.651919
Target:  5'- -gGGCGgcGGCCgAAagcGCGGCGggGGCGg -3'
miRNA:   3'- caCCGCuuUCGGgUU---UGCUGCa-CCGC- -5'
6351 5' -54.5 NC_001847.1 + 77424 0.72 0.651919
Target:  5'- -gGGCGAGGGCUUcguCGuCGUGGCGu -3'
miRNA:   3'- caCCGCUUUCGGGuuuGCuGCACCGC- -5'
6351 5' -54.5 NC_001847.1 + 15785 0.72 0.651919
Target:  5'- -cGGCGGcAAGCgCCGcGCGGCGggaGGCGg -3'
miRNA:   3'- caCCGCU-UUCG-GGUuUGCUGCa--CCGC- -5'
6351 5' -54.5 NC_001847.1 + 106690 0.72 0.662314
Target:  5'- -cGGCGgcGGCCCGucgcGCGGCGccgcGGCGu -3'
miRNA:   3'- caCCGCuuUCGGGUu---UGCUGCa---CCGC- -5'
6351 5' -54.5 NC_001847.1 + 134800 0.72 0.662314
Target:  5'- -gGGCGcGAAGCCCGGGaggGACGcgGGCGu -3'
miRNA:   3'- caCCGC-UUUCGGGUUUg--CUGCa-CCGC- -5'
6351 5' -54.5 NC_001847.1 + 71600 0.72 0.662314
Target:  5'- -cGGCGccGGCCCAGGCGGCGccaGCa -3'
miRNA:   3'- caCCGCuuUCGGGUUUGCUGCac-CGc -5'
6351 5' -54.5 NC_001847.1 + 31987 0.72 0.662314
Target:  5'- -gGGCGcGAAGCCCGGGaggGACGcgGGCGu -3'
miRNA:   3'- caCCGC-UUUCGGGUUUg--CUGCa-CCGC- -5'
6351 5' -54.5 NC_001847.1 + 3877 0.72 0.662314
Target:  5'- -cGGCGgcGGCCCGucgcGCGGCGccgcGGCGu -3'
miRNA:   3'- caCCGCuuUCGGGUu---UGCUGCa---CCGC- -5'
6351 5' -54.5 NC_001847.1 + 100974 0.72 0.672684
Target:  5'- -cGGCGccGAGCuCCGAGCGACGgaaGGUGc -3'
miRNA:   3'- caCCGCu-UUCG-GGUUUGCUGCa--CCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.