miRNA display CGI


Results 21 - 40 of 315 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6351 5' -54.5 NC_001847.1 + 104726 0.78 0.347099
Target:  5'- -cGuGCGAGAGCCCGccGCGGCGcGGCGg -3'
miRNA:   3'- caC-CGCUUUCGGGUu-UGCUGCaCCGC- -5'
6351 5' -54.5 NC_001847.1 + 134800 0.72 0.662314
Target:  5'- -gGGCGcGAAGCCCGGGaggGACGcgGGCGu -3'
miRNA:   3'- caCCGC-UUUCGGGUUUg--CUGCa-CCGC- -5'
6351 5' -54.5 NC_001847.1 + 106690 0.72 0.662314
Target:  5'- -cGGCGgcGGCCCGucgcGCGGCGccgcGGCGu -3'
miRNA:   3'- caCCGCuuUCGGGUu---UGCUGCa---CCGC- -5'
6351 5' -54.5 NC_001847.1 + 37223 0.74 0.548423
Target:  5'- uUGGCGgcGGCgCGGACGACccGGCGg -3'
miRNA:   3'- cACCGCuuUCGgGUUUGCUGcaCCGC- -5'
6351 5' -54.5 NC_001847.1 + 29647 0.75 0.497458
Target:  5'- gGUGGCugcGGAcgcgcugcccuucAGCgCAAACGGCGUGGCGc -3'
miRNA:   3'- -CACCG---CUU-------------UCGgGUUUGCUGCACCGC- -5'
6351 5' -54.5 NC_001847.1 + 15525 0.71 0.713727
Target:  5'- -cGGCGGGAGCCgCGGGCuGC-UGGCGc -3'
miRNA:   3'- caCCGCUUUCGG-GUUUGcUGcACCGC- -5'
6351 5' -54.5 NC_001847.1 + 105090 0.71 0.683019
Target:  5'- -cGGCGGAAGCCgCcgucGGCGGCGgggccgccgGGCGg -3'
miRNA:   3'- caCCGCUUUCGG-Gu---UUGCUGCa--------CCGC- -5'
6351 5' -54.5 NC_001847.1 + 52047 0.75 0.47901
Target:  5'- -aGGCGGAGGCCCGcccggagguGugGGCG-GGCa -3'
miRNA:   3'- caCCGCUUUCGGGU---------UugCUGCaCCGc -5'
6351 5' -54.5 NC_001847.1 + 43239 0.72 0.641508
Target:  5'- -cGGUGggGGCgCgCGGGCGGCGcGGCGc -3'
miRNA:   3'- caCCGCuuUCG-G-GUUUGCUGCaCCGC- -5'
6351 5' -54.5 NC_001847.1 + 59923 0.73 0.604024
Target:  5'- -cGGCGAGAGCCggcggaaGGGCGccacgcaagcguccgGCGUGGCGu -3'
miRNA:   3'- caCCGCUUUCGGg------UUUGC---------------UGCACCGC- -5'
6351 5' -54.5 NC_001847.1 + 30385 0.75 0.469436
Target:  5'- cUGGUGcgGGCgCAGACGGCGcUGGCGc -3'
miRNA:   3'- cACCGCuuUCGgGUUUGCUGC-ACCGC- -5'
6351 5' -54.5 NC_001847.1 + 27529 0.75 0.459961
Target:  5'- -cGGCGggGacGCCCGAgaacgGCGGCGcGGCGg -3'
miRNA:   3'- caCCGCuuU--CGGGUU-----UGCUGCaCCGC- -5'
6351 5' -54.5 NC_001847.1 + 19196 0.71 0.733854
Target:  5'- -gGGCGGGgucuguGGCCCAGACGGCGaGuGCc -3'
miRNA:   3'- caCCGCUU------UCGGGUUUGCUGCaC-CGc -5'
6351 5' -54.5 NC_001847.1 + 65824 0.71 0.713727
Target:  5'- -cGGCuGcuGGCCC--ACGGCGUGGUGu -3'
miRNA:   3'- caCCG-CuuUCGGGuuUGCUGCACCGC- -5'
6351 5' -54.5 NC_001847.1 + 83249 0.72 0.651919
Target:  5'- -gGGCGgcGGCCgAAagcGCGGCGggGGCGg -3'
miRNA:   3'- caCCGCuuUCGGgUU---UGCUGCa-CCGC- -5'
6351 5' -54.5 NC_001847.1 + 59576 0.75 0.498438
Target:  5'- -cGGCGGAAGCUCuGGCuGGCGUGcGCGu -3'
miRNA:   3'- caCCGCUUUCGGGuUUG-CUGCAC-CGC- -5'
6351 5' -54.5 NC_001847.1 + 104889 0.75 0.497458
Target:  5'- gGUGGCGGcgagcgccccgcgGGGCCCGcGCGGCGgcgGGCc -3'
miRNA:   3'- -CACCGCU-------------UUCGGGUuUGCUGCa--CCGc -5'
6351 5' -54.5 NC_001847.1 + 37322 0.75 0.45902
Target:  5'- uGUGGCGGcacgcGCCCGAcgcggccacgcgcGCGAcCGUGGCGg -3'
miRNA:   3'- -CACCGCUuu---CGGGUU-------------UGCU-GCACCGC- -5'
6351 5' -54.5 NC_001847.1 + 30933 0.73 0.599869
Target:  5'- -cGGCGGAGGCCUucgcauAAACGGCGcUGcGCGc -3'
miRNA:   3'- caCCGCUUUCGGG------UUUGCUGC-AC-CGC- -5'
6351 5' -54.5 NC_001847.1 + 125002 0.72 0.648797
Target:  5'- -gGGCGAGAGCugcagcagcgccucCCAgcacgcguccGugGGCGUGGCGc -3'
miRNA:   3'- caCCGCUUUCG--------------GGU----------UugCUGCACCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.