miRNA display CGI


Results 21 - 40 of 315 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6351 5' -54.5 NC_001847.1 + 59923 0.73 0.604024
Target:  5'- -cGGCGAGAGCCggcggaaGGGCGccacgcaagcguccgGCGUGGCGu -3'
miRNA:   3'- caCCGCUUUCGGg------UUUGC---------------UGCACCGC- -5'
6351 5' -54.5 NC_001847.1 + 28216 0.74 0.548423
Target:  5'- -cGGCGuucGGCCCGGugaacaugcagcGCGugGUGGUGg -3'
miRNA:   3'- caCCGCuu-UCGGGUU------------UGCugCACCGC- -5'
6351 5' -54.5 NC_001847.1 + 12493 0.75 0.492572
Target:  5'- -cGGCGggGGCggccaagaacccgggCCAGACGACGaaGGCGa -3'
miRNA:   3'- caCCGCuuUCG---------------GGUUUGCUGCa-CCGC- -5'
6351 5' -54.5 NC_001847.1 + 133553 0.76 0.441323
Target:  5'- -cGcGCGcuGGCCCGAGCGGCGcgcUGGCGc -3'
miRNA:   3'- caC-CGCuuUCGGGUUUGCUGC---ACCGC- -5'
6351 5' -54.5 NC_001847.1 + 77781 0.71 0.692284
Target:  5'- cGUGcG-GGAGGCCCAgcgcggaugucugGAgGACGUGGCGc -3'
miRNA:   3'- -CAC-CgCUUUCGGGU-------------UUgCUGCACCGC- -5'
6351 5' -54.5 NC_001847.1 + 15785 0.72 0.651919
Target:  5'- -cGGCGGcAAGCgCCGcGCGGCGggaGGCGg -3'
miRNA:   3'- caCCGCU-UUCG-GGUuUGCUGCa--CCGC- -5'
6351 5' -54.5 NC_001847.1 + 77926 0.74 0.528212
Target:  5'- -cGGCGAcGAGCCCcGGCGGCcggGGCGu -3'
miRNA:   3'- caCCGCU-UUCGGGuUUGCUGca-CCGC- -5'
6351 5' -54.5 NC_001847.1 + 27734 0.76 0.432165
Target:  5'- -cGGCGGAAGCCgcGGCGGCGguugcGGCGg -3'
miRNA:   3'- caCCGCUUUCGGguUUGCUGCa----CCGC- -5'
6351 5' -54.5 NC_001847.1 + 77424 0.72 0.651919
Target:  5'- -gGGCGAGGGCUUcguCGuCGUGGCGu -3'
miRNA:   3'- caCCGCUUUCGGGuuuGCuGCACCGC- -5'
6351 5' -54.5 NC_001847.1 + 80909 0.76 0.423119
Target:  5'- cGUGGCc---GCCCAAGCGGCcGUGGCc -3'
miRNA:   3'- -CACCGcuuuCGGGUUUGCUG-CACCGc -5'
6351 5' -54.5 NC_001847.1 + 36983 0.74 0.538285
Target:  5'- -cGGCGAGcgGGCCCGcgccgAGCGGCGgcGGCGc -3'
miRNA:   3'- caCCGCUU--UCGGGU-----UUGCUGCa-CCGC- -5'
6351 5' -54.5 NC_001847.1 + 54525 0.73 0.610261
Target:  5'- gGUGGggcggggccgucCGggGGCgCAGACGGCGggGGCGg -3'
miRNA:   3'- -CACC------------GCuuUCGgGUUUGCUGCa-CCGC- -5'
6351 5' -54.5 NC_001847.1 + 33498 0.75 0.498438
Target:  5'- -cGGCGgcGGCgCGGGCGGCGgcgGGCGc -3'
miRNA:   3'- caCCGCuuUCGgGUUUGCUGCa--CCGC- -5'
6351 5' -54.5 NC_001847.1 + 5275 0.75 0.496479
Target:  5'- -aGGCGAAAGUCCAcguccagGACGAUGUugguuacGGCGa -3'
miRNA:   3'- caCCGCUUUCGGGU-------UUGCUGCA-------CCGC- -5'
6351 5' -54.5 NC_001847.1 + 20521 0.75 0.47901
Target:  5'- -gGGCGggGGCCCAcuggAAgGACGUgaacuucucGGCGg -3'
miRNA:   3'- caCCGCuuUCGGGU----UUgCUGCA---------CCGC- -5'
6351 5' -54.5 NC_001847.1 + 37322 0.75 0.45902
Target:  5'- uGUGGCGGcacgcGCCCGAcgcggccacgcgcGCGAcCGUGGCGg -3'
miRNA:   3'- -CACCGCUuu---CGGGUU-------------UGCU-GCACCGC- -5'
6351 5' -54.5 NC_001847.1 + 124927 0.71 0.727851
Target:  5'- -gGGCGAcagcgggcgcgcccuGGGCCCGgcGGCGGCGgcGGCGc -3'
miRNA:   3'- caCCGCU---------------UUCGGGU--UUGCUGCa-CCGC- -5'
6351 5' -54.5 NC_001847.1 + 82792 0.71 0.693311
Target:  5'- aUGGaCGAGuuucuGGCCgAGGCGGCG-GGCGa -3'
miRNA:   3'- cACC-GCUU-----UCGGgUUUGCUGCaCCGC- -5'
6351 5' -54.5 NC_001847.1 + 100974 0.72 0.672684
Target:  5'- -cGGCGccGAGCuCCGAGCGACGgaaGGUGc -3'
miRNA:   3'- caCCGCu-UUCG-GGUUUGCUGCa--CCGC- -5'
6351 5' -54.5 NC_001847.1 + 83249 0.72 0.651919
Target:  5'- -gGGCGgcGGCCgAAagcGCGGCGggGGCGg -3'
miRNA:   3'- caCCGCuuUCGGgUU---UGCUGCa-CCGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.