miRNA display CGI


Results 1 - 20 of 315 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6351 5' -54.5 NC_001847.1 + 135131 0.71 0.683019
Target:  5'- -gGGUcgcaGggGGCCCGcGCGGCGcGGCGc -3'
miRNA:   3'- caCCG----CuuUCGGGUuUGCUGCaCCGC- -5'
6351 5' -54.5 NC_001847.1 + 134917 0.68 0.875398
Target:  5'- -gGGCGcGAGGCCCGGGCucgggcccccgGGCGccgggGGCGg -3'
miRNA:   3'- caCCGC-UUUCGGGUUUG-----------CUGCa----CCGC- -5'
6351 5' -54.5 NC_001847.1 + 134800 0.72 0.662314
Target:  5'- -gGGCGcGAAGCCCGGGaggGACGcgGGCGu -3'
miRNA:   3'- caCCGC-UUUCGGGUUUg--CUGCa-CCGC- -5'
6351 5' -54.5 NC_001847.1 + 134170 0.69 0.80993
Target:  5'- -cGGCGGAAGCCCcgcCGGCccgGGUGc -3'
miRNA:   3'- caCCGCUUUCGGGuuuGCUGca-CCGC- -5'
6351 5' -54.5 NC_001847.1 + 134124 0.66 0.936995
Target:  5'- -cGGCGc--GCCgCGGGCGGCGgccUGGUGg -3'
miRNA:   3'- caCCGCuuuCGG-GUUUGCUGC---ACCGC- -5'
6351 5' -54.5 NC_001847.1 + 133553 0.76 0.441323
Target:  5'- -cGcGCGcuGGCCCGAGCGGCGcgcUGGCGc -3'
miRNA:   3'- caC-CGCuuUCGGGUUUGCUGC---ACCGC- -5'
6351 5' -54.5 NC_001847.1 + 133197 0.68 0.849143
Target:  5'- -cGGCGAGgacgagcgccggcGGCCCGAguggccgccgcgccGCGGCG-GGCu -3'
miRNA:   3'- caCCGCUU-------------UCGGGUU--------------UGCUGCaCCGc -5'
6351 5' -54.5 NC_001847.1 + 132955 0.68 0.875398
Target:  5'- -aGGUGcgcccgcacGccGCCCAGGCGGCGcgGGCGc -3'
miRNA:   3'- caCCGC---------UuuCGGGUUUGCUGCa-CCGC- -5'
6351 5' -54.5 NC_001847.1 + 132641 0.7 0.763335
Target:  5'- -aGcGCGAGgcGGCCCucGCGACGUcuucacacGGCGg -3'
miRNA:   3'- caC-CGCUU--UCGGGuuUGCUGCA--------CCGC- -5'
6351 5' -54.5 NC_001847.1 + 132498 0.76 0.423119
Target:  5'- -gGGCGAAGGCgCCGcaAGCGGCGacGGCGg -3'
miRNA:   3'- caCCGCUUUCG-GGU--UUGCUGCa-CCGC- -5'
6351 5' -54.5 NC_001847.1 + 132436 0.66 0.941806
Target:  5'- gGUGGaggacaUGAGGGCCgGGGCGcCGcgGGCGg -3'
miRNA:   3'- -CACC------GCUUUCGGgUUUGCuGCa-CCGC- -5'
6351 5' -54.5 NC_001847.1 + 132327 0.7 0.763335
Target:  5'- -cGGCGGAGGUgCCGGcGCGGC-UGGCGg -3'
miRNA:   3'- caCCGCUUUCG-GGUU-UGCUGcACCGC- -5'
6351 5' -54.5 NC_001847.1 + 132264 0.66 0.921081
Target:  5'- -cGGCGAcgcacccGGCCCGacGACGACGcccGCGa -3'
miRNA:   3'- caCCGCUu------UCGGGU--UUGCUGCac-CGC- -5'
6351 5' -54.5 NC_001847.1 + 132130 0.68 0.852359
Target:  5'- -cGGCGc-GGCCC--GCGACGcGGUGg -3'
miRNA:   3'- caCCGCuuUCGGGuuUGCUGCaCCGC- -5'
6351 5' -54.5 NC_001847.1 + 131910 0.66 0.931938
Target:  5'- -cGGCGAGcacGGCgCGGGCGGCGc-GCGa -3'
miRNA:   3'- caCCGCUU---UCGgGUUUGCUGCacCGC- -5'
6351 5' -54.5 NC_001847.1 + 131007 0.69 0.827462
Target:  5'- --aGCGAugccGGGCCCGagGACGAUGggGGCGa -3'
miRNA:   3'- cacCGCU----UUCGGGU--UUGCUGCa-CCGC- -5'
6351 5' -54.5 NC_001847.1 + 130943 0.68 0.852359
Target:  5'- -cGGCGAcguuGGGCCCGAggacugcaGCGACGccgGGUc -3'
miRNA:   3'- caCCGCU----UUCGGGUU--------UGCUGCa--CCGc -5'
6351 5' -54.5 NC_001847.1 + 130730 0.67 0.896412
Target:  5'- -gGGCGGAGGCgCGGAgGACGcGGaCa -3'
miRNA:   3'- caCCGCUUUCGgGUUUgCUGCaCC-Gc -5'
6351 5' -54.5 NC_001847.1 + 130526 0.7 0.782402
Target:  5'- cGUGGUcccAGAGCgCugcGACGACGUGGCc -3'
miRNA:   3'- -CACCGc--UUUCGgGu--UUGCUGCACCGc -5'
6351 5' -54.5 NC_001847.1 + 130187 0.66 0.936995
Target:  5'- -gGGCGcccGGCCUGAAgaGACG-GGCGg -3'
miRNA:   3'- caCCGCuu-UCGGGUUUg-CUGCaCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.