miRNA display CGI


Results 1 - 20 of 315 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6351 5' -54.5 NC_001847.1 + 473 0.67 0.896412
Target:  5'- -cGGCGgcGGCagCAGcgGCGGCGgcggGGCGg -3'
miRNA:   3'- caCCGCuuUCGg-GUU--UGCUGCa---CCGC- -5'
6351 5' -54.5 NC_001847.1 + 532 0.67 0.889641
Target:  5'- -gGGCaaguGCCCGAcGCGgggaACGUGGCGg -3'
miRNA:   3'- caCCGcuuuCGGGUU-UGC----UGCACCGC- -5'
6351 5' -54.5 NC_001847.1 + 760 0.69 0.800909
Target:  5'- -gGGCGAGgccGGCCCGccgccGGCGGCGccGGCc -3'
miRNA:   3'- caCCGCUU---UCGGGU-----UUGCUGCa-CCGc -5'
6351 5' -54.5 NC_001847.1 + 1114 0.68 0.835955
Target:  5'- --cGCGu--GCCCcuGCGACGcUGGCGa -3'
miRNA:   3'- cacCGCuuuCGGGuuUGCUGC-ACCGC- -5'
6351 5' -54.5 NC_001847.1 + 1263 0.66 0.936995
Target:  5'- -cGGCGcgccGAGCCCccagcgguuGGCGGCGcGGUGg -3'
miRNA:   3'- caCCGCu---UUCGGGu--------UUGCUGCaCCGC- -5'
6351 5' -54.5 NC_001847.1 + 1431 0.75 0.488679
Target:  5'- gGUGcGCG--GGCCCAGGCG-CGUGGCc -3'
miRNA:   3'- -CAC-CGCuuUCGGGUUUGCuGCACCGc -5'
6351 5' -54.5 NC_001847.1 + 1913 0.78 0.347099
Target:  5'- -cGuGCGAGAGCCCGccGCGGCGcGGCGg -3'
miRNA:   3'- caC-CGCUUUCGGGUu-UGCUGCaCCGC- -5'
6351 5' -54.5 NC_001847.1 + 1924 0.68 0.867936
Target:  5'- gGUGGCG-AGGCUUAGcCGGCGcgcGGCGc -3'
miRNA:   3'- -CACCGCuUUCGGGUUuGCUGCa--CCGC- -5'
6351 5' -54.5 NC_001847.1 + 2076 0.75 0.497458
Target:  5'- gGUGGCGGcgagcgccccgcgGGGCCCGcGCGGCGgcgGGCc -3'
miRNA:   3'- -CACCGCU-------------UUCGGGUuUGCUGCa--CCGc -5'
6351 5' -54.5 NC_001847.1 + 2277 0.71 0.683019
Target:  5'- -cGGCGGAAGCCgCcgucGGCGGCGgggccgccgGGCGg -3'
miRNA:   3'- caCCGCUUUCGG-Gu---UUGCUGCa--------CCGC- -5'
6351 5' -54.5 NC_001847.1 + 3126 0.69 0.827462
Target:  5'- -cGGCcgagagcaccGGGAGCCCGgcggcgccGGCGGCGcGGCGg -3'
miRNA:   3'- caCCG----------CUUUCGGGU--------UUGCUGCaCCGC- -5'
6351 5' -54.5 NC_001847.1 + 3285 0.66 0.921081
Target:  5'- -cGGCGAGcacggcgcgcAGCUCGGcgagcGCGGCGcgGGCGc -3'
miRNA:   3'- caCCGCUU----------UCGGGUU-----UGCUGCa-CCGC- -5'
6351 5' -54.5 NC_001847.1 + 3435 0.66 0.915281
Target:  5'- -aGGCGc-AGCCCAGGgGGuCGaGGCGg -3'
miRNA:   3'- caCCGCuuUCGGGUUUgCU-GCaCCGC- -5'
6351 5' -54.5 NC_001847.1 + 3819 0.69 0.827462
Target:  5'- -gGGCGucGGCC---GCGAgCGUGGCGu -3'
miRNA:   3'- caCCGCuuUCGGguuUGCU-GCACCGC- -5'
6351 5' -54.5 NC_001847.1 + 3877 0.72 0.662314
Target:  5'- -cGGCGgcGGCCCGucgcGCGGCGccgcGGCGu -3'
miRNA:   3'- caCCGCuuUCGGGUu---UGCUGCa---CCGC- -5'
6351 5' -54.5 NC_001847.1 + 3973 0.69 0.827462
Target:  5'- -cGGCGAGGGCgCCGGGgGcCG-GGCGc -3'
miRNA:   3'- caCCGCUUUCG-GGUUUgCuGCaCCGC- -5'
6351 5' -54.5 NC_001847.1 + 4541 0.69 0.818784
Target:  5'- -cGGCGGccGCCCgcGggUGGCGcGGCGu -3'
miRNA:   3'- caCCGCUuuCGGG--UuuGCUGCaCCGC- -5'
6351 5' -54.5 NC_001847.1 + 5021 0.69 0.809035
Target:  5'- -cGGCGcggagggGAAGCUCGGGCGACc-GGCGg -3'
miRNA:   3'- caCCGC-------UUUCGGGUUUGCUGcaCCGC- -5'
6351 5' -54.5 NC_001847.1 + 5070 0.67 0.909235
Target:  5'- -gGGCGc-GGCCCAgGACGGCGacGCGu -3'
miRNA:   3'- caCCGCuuUCGGGU-UUGCUGCacCGC- -5'
6351 5' -54.5 NC_001847.1 + 5275 0.75 0.496479
Target:  5'- -aGGCGAAAGUCCAcguccagGACGAUGUugguuacGGCGa -3'
miRNA:   3'- caCCGCUUUCGGGU-------UUGCUGCA-------CCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.