Results 1 - 20 of 315 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6351 | 5' | -54.5 | NC_001847.1 | + | 473 | 0.67 | 0.896412 |
Target: 5'- -cGGCGgcGGCagCAGcgGCGGCGgcggGGCGg -3' miRNA: 3'- caCCGCuuUCGg-GUU--UGCUGCa---CCGC- -5' |
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6351 | 5' | -54.5 | NC_001847.1 | + | 532 | 0.67 | 0.889641 |
Target: 5'- -gGGCaaguGCCCGAcGCGgggaACGUGGCGg -3' miRNA: 3'- caCCGcuuuCGGGUU-UGC----UGCACCGC- -5' |
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6351 | 5' | -54.5 | NC_001847.1 | + | 760 | 0.69 | 0.800909 |
Target: 5'- -gGGCGAGgccGGCCCGccgccGGCGGCGccGGCc -3' miRNA: 3'- caCCGCUU---UCGGGU-----UUGCUGCa-CCGc -5' |
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6351 | 5' | -54.5 | NC_001847.1 | + | 1114 | 0.68 | 0.835955 |
Target: 5'- --cGCGu--GCCCcuGCGACGcUGGCGa -3' miRNA: 3'- cacCGCuuuCGGGuuUGCUGC-ACCGC- -5' |
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6351 | 5' | -54.5 | NC_001847.1 | + | 1263 | 0.66 | 0.936995 |
Target: 5'- -cGGCGcgccGAGCCCccagcgguuGGCGGCGcGGUGg -3' miRNA: 3'- caCCGCu---UUCGGGu--------UUGCUGCaCCGC- -5' |
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6351 | 5' | -54.5 | NC_001847.1 | + | 1431 | 0.75 | 0.488679 |
Target: 5'- gGUGcGCG--GGCCCAGGCG-CGUGGCc -3' miRNA: 3'- -CAC-CGCuuUCGGGUUUGCuGCACCGc -5' |
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6351 | 5' | -54.5 | NC_001847.1 | + | 1913 | 0.78 | 0.347099 |
Target: 5'- -cGuGCGAGAGCCCGccGCGGCGcGGCGg -3' miRNA: 3'- caC-CGCUUUCGGGUu-UGCUGCaCCGC- -5' |
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6351 | 5' | -54.5 | NC_001847.1 | + | 1924 | 0.68 | 0.867936 |
Target: 5'- gGUGGCG-AGGCUUAGcCGGCGcgcGGCGc -3' miRNA: 3'- -CACCGCuUUCGGGUUuGCUGCa--CCGC- -5' |
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6351 | 5' | -54.5 | NC_001847.1 | + | 2076 | 0.75 | 0.497458 |
Target: 5'- gGUGGCGGcgagcgccccgcgGGGCCCGcGCGGCGgcgGGCc -3' miRNA: 3'- -CACCGCU-------------UUCGGGUuUGCUGCa--CCGc -5' |
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6351 | 5' | -54.5 | NC_001847.1 | + | 2277 | 0.71 | 0.683019 |
Target: 5'- -cGGCGGAAGCCgCcgucGGCGGCGgggccgccgGGCGg -3' miRNA: 3'- caCCGCUUUCGG-Gu---UUGCUGCa--------CCGC- -5' |
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6351 | 5' | -54.5 | NC_001847.1 | + | 3126 | 0.69 | 0.827462 |
Target: 5'- -cGGCcgagagcaccGGGAGCCCGgcggcgccGGCGGCGcGGCGg -3' miRNA: 3'- caCCG----------CUUUCGGGU--------UUGCUGCaCCGC- -5' |
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6351 | 5' | -54.5 | NC_001847.1 | + | 3285 | 0.66 | 0.921081 |
Target: 5'- -cGGCGAGcacggcgcgcAGCUCGGcgagcGCGGCGcgGGCGc -3' miRNA: 3'- caCCGCUU----------UCGGGUU-----UGCUGCa-CCGC- -5' |
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6351 | 5' | -54.5 | NC_001847.1 | + | 3435 | 0.66 | 0.915281 |
Target: 5'- -aGGCGc-AGCCCAGGgGGuCGaGGCGg -3' miRNA: 3'- caCCGCuuUCGGGUUUgCU-GCaCCGC- -5' |
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6351 | 5' | -54.5 | NC_001847.1 | + | 3819 | 0.69 | 0.827462 |
Target: 5'- -gGGCGucGGCC---GCGAgCGUGGCGu -3' miRNA: 3'- caCCGCuuUCGGguuUGCU-GCACCGC- -5' |
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6351 | 5' | -54.5 | NC_001847.1 | + | 3877 | 0.72 | 0.662314 |
Target: 5'- -cGGCGgcGGCCCGucgcGCGGCGccgcGGCGu -3' miRNA: 3'- caCCGCuuUCGGGUu---UGCUGCa---CCGC- -5' |
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6351 | 5' | -54.5 | NC_001847.1 | + | 3973 | 0.69 | 0.827462 |
Target: 5'- -cGGCGAGGGCgCCGGGgGcCG-GGCGc -3' miRNA: 3'- caCCGCUUUCG-GGUUUgCuGCaCCGC- -5' |
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6351 | 5' | -54.5 | NC_001847.1 | + | 4541 | 0.69 | 0.818784 |
Target: 5'- -cGGCGGccGCCCgcGggUGGCGcGGCGu -3' miRNA: 3'- caCCGCUuuCGGG--UuuGCUGCaCCGC- -5' |
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6351 | 5' | -54.5 | NC_001847.1 | + | 5021 | 0.69 | 0.809035 |
Target: 5'- -cGGCGcggagggGAAGCUCGGGCGACc-GGCGg -3' miRNA: 3'- caCCGC-------UUUCGGGUUUGCUGcaCCGC- -5' |
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6351 | 5' | -54.5 | NC_001847.1 | + | 5070 | 0.67 | 0.909235 |
Target: 5'- -gGGCGc-GGCCCAgGACGGCGacGCGu -3' miRNA: 3'- caCCGCuuUCGGGU-UUGCUGCacCGC- -5' |
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6351 | 5' | -54.5 | NC_001847.1 | + | 5275 | 0.75 | 0.496479 |
Target: 5'- -aGGCGAAAGUCCAcguccagGACGAUGUugguuacGGCGa -3' miRNA: 3'- caCCGCUUUCGGGU-------UUGCUGCA-------CCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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