miRNA display CGI


Results 61 - 80 of 315 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6351 5' -54.5 NC_001847.1 + 103016 0.72 0.651919
Target:  5'- -cGGCGGc-GCCCAGcgccgGCGGCG-GGCGg -3'
miRNA:   3'- caCCGCUuuCGGGUU-----UGCUGCaCCGC- -5'
6351 5' -54.5 NC_001847.1 + 105090 0.71 0.683019
Target:  5'- -cGGCGGAAGCCgCcgucGGCGGCGgggccgccgGGCGg -3'
miRNA:   3'- caCCGCUUUCGG-Gu---UUGCUGCa--------CCGC- -5'
6351 5' -54.5 NC_001847.1 + 2277 0.71 0.683019
Target:  5'- -cGGCGGAAGCCgCcgucGGCGGCGgggccgccgGGCGg -3'
miRNA:   3'- caCCGCUUUCGG-Gu---UUGCUGCa--------CCGC- -5'
6351 5' -54.5 NC_001847.1 + 22114 0.71 0.727851
Target:  5'- -gGGCGAcagcgggcgcgcccuGGGCCCGgcGGCGGCGgcGGCGc -3'
miRNA:   3'- caCCGCU---------------UUCGGGU--UUGCUGCa-CCGC- -5'
6351 5' -54.5 NC_001847.1 + 19196 0.71 0.733854
Target:  5'- -gGGCGGGgucuguGGCCCAGACGGCGaGuGCc -3'
miRNA:   3'- caCCGCUU------UCGGGUUUGCUGCaC-CGc -5'
6351 5' -54.5 NC_001847.1 + 82792 0.71 0.693311
Target:  5'- aUGGaCGAGuuucuGGCCgAGGCGGCG-GGCGa -3'
miRNA:   3'- cACC-GCUU-----UCGGgUUUGCUGCaCCGC- -5'
6351 5' -54.5 NC_001847.1 + 43118 0.71 0.733854
Target:  5'- -cGGCGGu-GCCCGcaGACGGCGcgGGCc -3'
miRNA:   3'- caCCGCUuuCGGGU--UUGCUGCa-CCGc -5'
6351 5' -54.5 NC_001847.1 + 65824 0.71 0.713727
Target:  5'- -cGGCuGcuGGCCC--ACGGCGUGGUGu -3'
miRNA:   3'- caCCG-CuuUCGGGuuUGCUGCACCGC- -5'
6351 5' -54.5 NC_001847.1 + 15525 0.71 0.713727
Target:  5'- -cGGCGGGAGCCgCGGGCuGC-UGGCGc -3'
miRNA:   3'- caCCGCUUUCGG-GUUUGcUGcACCGC- -5'
6351 5' -54.5 NC_001847.1 + 77781 0.71 0.692284
Target:  5'- cGUGcG-GGAGGCCCAgcgcggaugucugGAgGACGUGGCGc -3'
miRNA:   3'- -CAC-CgCUUUCGGGU-------------UUgCUGCACCGC- -5'
6351 5' -54.5 NC_001847.1 + 124927 0.71 0.727851
Target:  5'- -gGGCGAcagcgggcgcgcccuGGGCCCGgcGGCGGCGgcGGCGc -3'
miRNA:   3'- caCCGCU---------------UUCGGGU--UUGCUGCa-CCGC- -5'
6351 5' -54.5 NC_001847.1 + 135131 0.71 0.683019
Target:  5'- -gGGUcgcaGggGGCCCGcGCGGCGcGGCGc -3'
miRNA:   3'- caCCG----CuuUCGGGUuUGCUGCaCCGC- -5'
6351 5' -54.5 NC_001847.1 + 32318 0.71 0.683019
Target:  5'- -gGGUcgcaGggGGCCCGcGCGGCGcGGCGc -3'
miRNA:   3'- caCCG----CuuUCGGGUuUGCUGCaCCGC- -5'
6351 5' -54.5 NC_001847.1 + 92788 0.71 0.723832
Target:  5'- -aGGCGcuGGCCaCcGAgGACGUGGCc -3'
miRNA:   3'- caCCGCuuUCGG-GuUUgCUGCACCGc -5'
6351 5' -54.5 NC_001847.1 + 14211 0.7 0.743786
Target:  5'- cUGGCGGucAGGCCgGccGGgGGCGUGGUGa -3'
miRNA:   3'- cACCGCU--UUCGGgU--UUgCUGCACCGC- -5'
6351 5' -54.5 NC_001847.1 + 21665 0.7 0.743786
Target:  5'- -gGGCGAGccCCCcGGCGACGgguaUGGCGa -3'
miRNA:   3'- caCCGCUUucGGGuUUGCUGC----ACCGC- -5'
6351 5' -54.5 NC_001847.1 + 81835 0.7 0.763335
Target:  5'- -aGGCG-AGGUCCAgcgcguacgucAGCGGCGUgaGGCGg -3'
miRNA:   3'- caCCGCuUUCGGGU-----------UUGCUGCA--CCGC- -5'
6351 5' -54.5 NC_001847.1 + 118475 0.7 0.743786
Target:  5'- -cGGCGcAAGGCCCGGGCGcgccUGUaGGCGc -3'
miRNA:   3'- caCCGC-UUUCGGGUUUGCu---GCA-CCGC- -5'
6351 5' -54.5 NC_001847.1 + 59433 0.7 0.753616
Target:  5'- -cGGCGgcGGCCC--GCGGCccGUGGCc -3'
miRNA:   3'- caCCGCuuUCGGGuuUGCUG--CACCGc -5'
6351 5' -54.5 NC_001847.1 + 103952 0.7 0.753616
Target:  5'- --aGCGAGAGCaCCGucGAUGGCGUcGGCGc -3'
miRNA:   3'- cacCGCUUUCG-GGU--UUGCUGCA-CCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.