miRNA display CGI


Results 61 - 80 of 315 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6351 5' -54.5 NC_001847.1 + 83160 0.66 0.921081
Target:  5'- -cGGCGAccucccAAcGCCCGacgggcuggcgGACGGCGgggGGCGc -3'
miRNA:   3'- caCCGCU------UU-CGGGU-----------UUGCUGCa--CCGC- -5'
6351 5' -54.5 NC_001847.1 + 70708 0.66 0.921081
Target:  5'- -cGGCGggGGCgCCc-GCGGCGaGcGCGa -3'
miRNA:   3'- caCCGCuuUCG-GGuuUGCUGCaC-CGC- -5'
6351 5' -54.5 NC_001847.1 + 63545 0.66 0.921081
Target:  5'- cUGGCGcc-GCCUggGcCGGCGccgGGCGg -3'
miRNA:   3'- cACCGCuuuCGGGuuU-GCUGCa--CCGC- -5'
6351 5' -54.5 NC_001847.1 + 106098 0.66 0.921081
Target:  5'- -cGGCGAGcacggcgcgcAGCUCGGcgagcGCGGCGcgGGCGc -3'
miRNA:   3'- caCCGCUU----------UCGGGUU-----UGCUGCa-CCGC- -5'
6351 5' -54.5 NC_001847.1 + 5926 0.66 0.921081
Target:  5'- -aGGCGGAugGGCggCGGACGACG-GGCc -3'
miRNA:   3'- caCCGCUU--UCGg-GUUUGCUGCaCCGc -5'
6351 5' -54.5 NC_001847.1 + 47684 0.66 0.921081
Target:  5'- cUGGaCGAcgAGGUCCu--CGGCGuUGGCGg -3'
miRNA:   3'- cACC-GCU--UUCGGGuuuGCUGC-ACCGC- -5'
6351 5' -54.5 NC_001847.1 + 36163 0.66 0.920512
Target:  5'- -cGGCGAGacguacuGGgCCAAccccuACGcCGUGGCGc -3'
miRNA:   3'- caCCGCUU-------UCgGGUU-----UGCuGCACCGC- -5'
6351 5' -54.5 NC_001847.1 + 53909 0.66 0.920512
Target:  5'- --cGCGAcGGCCCcgcccggAGGCGACGgcgacGGCGg -3'
miRNA:   3'- cacCGCUuUCGGG-------UUUGCUGCa----CCGC- -5'
6351 5' -54.5 NC_001847.1 + 31939 0.66 0.915281
Target:  5'- -cGGCGGguaagcggacGAGCCUgccGCGGCGgcGGCGg -3'
miRNA:   3'- caCCGCU----------UUCGGGuu-UGCUGCa-CCGC- -5'
6351 5' -54.5 NC_001847.1 + 17258 0.66 0.915281
Target:  5'- -gGGCGGggaagcagccgcAGGCCCAGuCGcCGgUGGCGu -3'
miRNA:   3'- caCCGCU------------UUCGGGUUuGCuGC-ACCGC- -5'
6351 5' -54.5 NC_001847.1 + 38095 0.66 0.915281
Target:  5'- -cGGgGAAagcAGCCCGGACGcCGcugcccGGCGg -3'
miRNA:   3'- caCCgCUU---UCGGGUUUGCuGCa-----CCGC- -5'
6351 5' -54.5 NC_001847.1 + 3435 0.66 0.915281
Target:  5'- -aGGCGc-AGCCCAGGgGGuCGaGGCGg -3'
miRNA:   3'- caCCGCuuUCGGGUUUgCU-GCaCCGC- -5'
6351 5' -54.5 NC_001847.1 + 66664 0.66 0.915281
Target:  5'- cUGGCGcgcuugcGCCCGcGCGGCGgGGCc -3'
miRNA:   3'- cACCGCuuu----CGGGUuUGCUGCaCCGc -5'
6351 5' -54.5 NC_001847.1 + 90723 0.66 0.915281
Target:  5'- cGUGcGCGAAcgcAGCCgCucGCGgcGCGUGGCc -3'
miRNA:   3'- -CAC-CGCUU---UCGG-GuuUGC--UGCACCGc -5'
6351 5' -54.5 NC_001847.1 + 70314 0.66 0.915281
Target:  5'- -gGGCGGcucGGCaCCAGgucguagucuACGAgGUGGCGc -3'
miRNA:   3'- caCCGCUu--UCG-GGUU----------UGCUgCACCGC- -5'
6351 5' -54.5 NC_001847.1 + 58910 0.66 0.915281
Target:  5'- aUGGCGucGGGUCgGGACGAgGUcGGCa -3'
miRNA:   3'- cACCGCu-UUCGGgUUUGCUgCA-CCGc -5'
6351 5' -54.5 NC_001847.1 + 27893 0.66 0.915281
Target:  5'- aUGGCGAGgucgccGGCCCGGccGCGcuuGCGgaggccagGGCGg -3'
miRNA:   3'- cACCGCUU------UCGGGUU--UGC---UGCa-------CCGC- -5'
6351 5' -54.5 NC_001847.1 + 54455 0.66 0.915281
Target:  5'- -gGGCGGggacGAGCCCGAG-GAgGagGGCGg -3'
miRNA:   3'- caCCGCU----UUCGGGUUUgCUgCa-CCGC- -5'
6351 5' -54.5 NC_001847.1 + 10129 0.66 0.914688
Target:  5'- -cGGCGAGcgGGCCCGGccguagcGCGAgCGggagGGCu -3'
miRNA:   3'- caCCGCUU--UCGGGUU-------UGCU-GCa---CCGc -5'
6351 5' -54.5 NC_001847.1 + 44705 0.66 0.913493
Target:  5'- -cGGUaGAGAGCCCAggguAGCGGgaagggcgccgccuCGUGGCc -3'
miRNA:   3'- caCCG-CUUUCGGGU----UUGCU--------------GCACCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.