miRNA display CGI


Results 1 - 20 of 468 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6352 3' -58.6 NC_001847.1 + 126609 1.09 0.001541
Target:  5'- cGACGCAAACGCCGGGACAGAGGCGGGc -3'
miRNA:   3'- -CUGCGUUUGCGGCCCUGUCUCCGCCC- -5'
6352 3' -58.6 NC_001847.1 + 45092 0.89 0.040207
Target:  5'- cGugGU--GCGCCGGGACGGGGGUGGGg -3'
miRNA:   3'- -CugCGuuUGCGGCCCUGUCUCCGCCC- -5'
6352 3' -58.6 NC_001847.1 + 8117 0.85 0.072159
Target:  5'- aGCGCAGGCGCgGGGcccCAGGGGCGGGc -3'
miRNA:   3'- cUGCGUUUGCGgCCCu--GUCUCCGCCC- -5'
6352 3' -58.6 NC_001847.1 + 30435 0.84 0.080156
Target:  5'- gGGCGCGgaGGCGCCGGGGCugcacGAGGUGGGc -3'
miRNA:   3'- -CUGCGU--UUGCGGCCCUGu----CUCCGCCC- -5'
6352 3' -58.6 NC_001847.1 + 32131 0.83 0.091348
Target:  5'- gGGCGcCGGGgGCgGGGGCGGGGGCGGGg -3'
miRNA:   3'- -CUGC-GUUUgCGgCCCUGUCUCCGCCC- -5'
6352 3' -58.6 NC_001847.1 + 134944 0.83 0.091348
Target:  5'- gGGCGcCGGGgGCgGGGGCGGGGGCGGGg -3'
miRNA:   3'- -CUGC-GUUUgCGgCCCUGUCUCCGCCC- -5'
6352 3' -58.6 NC_001847.1 + 54494 0.82 0.106735
Target:  5'- cGACGgcGGCGCCGGGGCcGGGGUGGGg -3'
miRNA:   3'- -CUGCguUUGCGGCCCUGuCUCCGCCC- -5'
6352 3' -58.6 NC_001847.1 + 61316 0.81 0.127754
Target:  5'- uGCGCGggUGCgCGGGGCGG-GGCGGGc -3'
miRNA:   3'- cUGCGUuuGCG-GCCCUGUCuCCGCCC- -5'
6352 3' -58.6 NC_001847.1 + 130793 0.81 0.131053
Target:  5'- gGAgGCGGccGCgGCCGGGGCGGAGGCGGc -3'
miRNA:   3'- -CUgCGUU--UG-CGGCCCUGUCUCCGCCc -5'
6352 3' -58.6 NC_001847.1 + 27980 0.81 0.131053
Target:  5'- gGAgGCGGccGCgGCCGGGGCGGAGGCGGc -3'
miRNA:   3'- -CUgCGUU--UG-CGGCCCUGUCUCCGCCc -5'
6352 3' -58.6 NC_001847.1 + 51 0.8 0.156426
Target:  5'- cGGCGCGugcauuGCGgCGGG-CGGGGGCGGGg -3'
miRNA:   3'- -CUGCGUu-----UGCgGCCCuGUCUCCGCCC- -5'
6352 3' -58.6 NC_001847.1 + 101145 0.8 0.160395
Target:  5'- gGGCGCGGGgGCUGGGGCcGGGGcCGGGg -3'
miRNA:   3'- -CUGCGUUUgCGGCCCUGuCUCC-GCCC- -5'
6352 3' -58.6 NC_001847.1 + 111257 0.8 0.164454
Target:  5'- gGAgGC-GGCGCCGGGuCGGAGGCGGc -3'
miRNA:   3'- -CUgCGuUUGCGGCCCuGUCUCCGCCc -5'
6352 3' -58.6 NC_001847.1 + 8444 0.8 0.164454
Target:  5'- gGAgGC-GGCGCCGGGuCGGAGGCGGc -3'
miRNA:   3'- -CUgCGuUUGCGGCCCuGUCUCCGCCc -5'
6352 3' -58.6 NC_001847.1 + 70229 0.79 0.17285
Target:  5'- cGGCGUugguguGACGCgCGGGGCGGGcGGCGGGc -3'
miRNA:   3'- -CUGCGu-----UUGCG-GCCCUGUCU-CCGCCC- -5'
6352 3' -58.6 NC_001847.1 + 54532 0.78 0.195531
Target:  5'- --gGCAAccGCgGCgGGGGCGGGGGCGGGg -3'
miRNA:   3'- cugCGUU--UG-CGgCCCUGUCUCCGCCC- -5'
6352 3' -58.6 NC_001847.1 + 76702 0.78 0.195531
Target:  5'- uGGCGCGGgaggaggcGCGCCGGGAaggaCGGucGGGCGGGg -3'
miRNA:   3'- -CUGCGUU--------UGCGGCCCU----GUC--UCCGCCC- -5'
6352 3' -58.6 NC_001847.1 + 88253 0.78 0.205311
Target:  5'- cGGCGCgGGGCGCCGGG-CGGGGaCGGGg -3'
miRNA:   3'- -CUGCG-UUUGCGGCCCuGUCUCcGCCC- -5'
6352 3' -58.6 NC_001847.1 + 22515 0.78 0.21551
Target:  5'- cGGCgGCGGGCcgggccggucuGCCGGGACaaaGGGGGCGGGa -3'
miRNA:   3'- -CUG-CGUUUG-----------CGGCCCUG---UCUCCGCCC- -5'
6352 3' -58.6 NC_001847.1 + 125328 0.78 0.21551
Target:  5'- cGGCgGCGGGCcgggccggucuGCCGGGACaaaGGGGGCGGGa -3'
miRNA:   3'- -CUG-CGUUUG-----------CGGCCCUG---UCUCCGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.